Browse Element(s) Details


OsAffx.12023.1.S1_at

Description tigr:9630.m01265
TID=OsAffx.12023.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1370010/11hypothetical protein
LOC_Os02g188301/11ribosome biogenesis protein NEP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13660Os.8984.1.S1_at11/112+7323779..7325175meiosis 5, putative, expressed
LOC_Os02g13670OsAffx.2600.1.S1_at11/112+7333138..7334086Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g13679NANA2+7338896..7339693NA
LOC_Os02g13690OsAffx.24231.1.S1_at4/112+7346820..7347587hypothetical protein
LOC_Os02g13690OsAffx.24231.1.S1_x_at4/112+7346820..7347587hypothetical protein
LOC_Os02g13700OsAffx.12023.1.S1_at10/112+7348539..7349632hypothetical protein
LOC_Os02g13710OsAffx.24232.2.S1_s_at11/112+7365310..7366400AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12023.1.S1_at--135--8032Chr02:7348943..7348967 (25 bp)
GGACTATCTTCGTGCTCGAGAGGGC
LOC_Os02g13700
OsAffx.12023.1.S1_at--583--1071NONE
AGGGCCTGCCTCAAGGGAGTCTAAA
NONE
OsAffx.12023.1.S1_at--760--7131Chr02:7349361..7349385 (25 bp)
GTCTAAATGAACTTTTTGCACCTGA
LOC_Os02g13700
OsAffx.12023.1.S1_at--636--10271Chr02:7349375..7349399 (25 bp)
TTTGCACCTGAAATGACGTCGTCGG
LOC_Os02g13700
OsAffx.12023.1.S1_at--720--8891Chr02:7349388..7349412 (25 bp)
TGACGTCGTCGGATATTAAGCCCAA
LOC_Os02g13700
OsAffx.12023.1.S1_at--57--9411Chr02:7349393..7349417 (25 bp)
TCGTCGGATATTAAGCCCAAGCTGC
LOC_Os02g13700
OsAffx.12023.1.S1_at--1006--4371Chr02:7349409..7349433 (25 bp)
CCAAGCTGCCGGACAGATTACCAGG
LOC_Os02g13700
OsAffx.12023.1.S1_at--636--5651Chr02:7349420..7349444 (25 bp)
GACAGATTACCAGGCGCGCTTGATG
LOC_Os02g13700
OsAffx.12023.1.S1_at--699--891Chr02:7349431..7349455 (25 bp)
AGGCGCGCTTGATGGGCCACCTTCA
LOC_Os02g13700
OsAffx.12023.1.S1_at--347--9691Chr02:7349453..7349477 (25 bp)
TCACGCACTCAAGCTTTTCGATCAG
LOC_Os02g13700
OsAffx.12023.1.S1_at--1143--2691Chr02:7349463..7349486 (24 bp)
AAGCTTTTCGATCAGTATGGGCCGA
LOC_Os02g13700
Target Sequence 
GGACTATCTTCGTGCTCGAGAGGGCCTGCCTCAAGGGAGTCTAAATGAACTTTTTGCACCTGAAATGACGTCGTCGGATA
TTAAGCCCAAGCTGCCGGACAGATTACCAGGCGCGCTTGATGGGCCACCTTCACGCACTCAAGCTTTTCGATCAGTATGG
GCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis