Browse Element(s) Details


OsAffx.12024.1.S1_at

Description tigr:9630.m01267
TID=OsAffx.12024.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1372011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13710OsAffx.24232.2.S1_s_at11/112+7365310..7366400AP2 domain containing protein, expressed
LOC_Os02g13720OsAffx.12024.1.S1_at11/112+7381950..7382180hypothetical protein
LOC_Os02g13730Os.46012.2.S1_x_at4/112+7387035..7390209retrotransposon protein, putative, unclassified
LOC_Os02g13730Os.46012.3.S1_x_at2/112+7387035..7390209retrotransposon protein, putative, unclassified
LOC_Os02g13730Os.27088.1.A1_x_at1/112+7387035..7390209retrotransposon protein, putative, unclassified
LOC_Os02g13730Os.54691.1.S1_x_at1/112+7387035..7390209retrotransposon protein, putative, unclassified
LOC_Os02g13740OsAffx.12025.1.S1_at11/112+7396380..7396817hypothetical protein
LOC_Os02g13750NANA2+7402713..7410877retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12024.1.S1_at--207--5691Chr02:7381985..7382009 (25 bp)
GACTTCCAGGCAGCCAGTCCGGCAG
LOC_Os02g13720
OsAffx.12024.1.S1_at--416--591Chr02:7382022..7382046 (25 bp)
ATGCCAGCAAATCCGCTGGCCAGGC
LOC_Os02g13720
OsAffx.12024.1.S1_at--688--4711Chr02:7382036..7382060 (25 bp)
GCTGGCCAGGCCACCAAGAAAAAGT
LOC_Os02g13720
OsAffx.12024.1.S1_at--145--2931Chr02:7382083..7382107 (25 bp)
AAGGAGCGGTAGTCACTGTGTCCTC
LOC_Os02g13720
OsAffx.12024.1.S1_at--1025--1611Chr02:7382087..7382111 (25 bp)
AGCGGTAGTCACTGTGTCCTCCGTT
LOC_Os02g13720
OsAffx.12024.1.S1_at--237--10071Chr02:7382092..7382116 (25 bp)
TAGTCACTGTGTCCTCCGTTGTTGT
LOC_Os02g13720
OsAffx.12024.1.S1_at--302--9691Chr02:7382095..7382119 (25 bp)
TCACTGTGTCCTCCGTTGTTGTCAT
LOC_Os02g13720
OsAffx.12024.1.S1_at--659--3891Chr02:7382098..7382122 (25 bp)
CTGTGTCCTCCGTTGTTGTCATCGC
LOC_Os02g13720
OsAffx.12024.1.S1_at--574--7111Chr02:7382115..7382139 (25 bp)
GTCATCGCCCCTCCAATGGGTGGAA
LOC_Os02g13720
OsAffx.12024.1.S1_at--1128--511Chr02:7382118..7382142 (25 bp)
ATCGCCCCTCCAATGGGTGGAAATA
LOC_Os02g13720
OsAffx.12024.1.S1_at--816--4151Chr02:7382120..7382144 (25 bp)
CGCCCCTCCAATGGGTGGAAATATA
LOC_Os02g13720
Target Sequence 
GACTTCCAGGCAGCCAGTCCGGCAGCCCCCTACCTCCATGCCAGCAAATCCGCTGGCCAGGCCACCAAGAAAAAGTAGAG
AGGAGAGGAGAGGAGAGGAAGGAGCGGTAGTCACTGTGTCCTCCGTTGTTGTCATCGCCCCTCCAATGGGTGGAAATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis