Browse Element(s) Details


OsAffx.12025.1.S1_at

Description tigr:9630.m01269
TID=OsAffx.12025.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1374011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13720OsAffx.12024.1.S1_at11/112+7381950..7382180hypothetical protein
LOC_Os02g13730Os.46012.2.S1_x_at4/112+7387035..7390209retrotransposon protein, putative, unclassified
LOC_Os02g13730Os.46012.3.S1_x_at2/112+7387035..7390209retrotransposon protein, putative, unclassified
LOC_Os02g13730Os.27088.1.A1_x_at1/112+7387035..7390209retrotransposon protein, putative, unclassified
LOC_Os02g13730Os.54691.1.S1_x_at1/112+7387035..7390209retrotransposon protein, putative, unclassified
LOC_Os02g13740OsAffx.12025.1.S1_at11/112+7396380..7396817hypothetical protein
LOC_Os02g13750NANA2+7402713..7410877retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12025.1.S1_at--817--7111Chr02:7396431..7396455 (25 bp)
GTCAGATGCAGAGGCACGATAGGCT
LOC_Os02g13740
OsAffx.12025.1.S1_at--595--8231Chr02:7396468..7396492 (25 bp)
GGCAAGCGCAACAGCGCGGACGCAT
LOC_Os02g13740
OsAffx.12025.1.S1_at--127--5152Chr02:7396475..7396499 (25 bp)
GCAACAGCGCGGACGCATAGAGGCC
LOC_Os02g13740
OsAffx.12025.1.S1_at--1052--8631Chr02:7396518..7396542 (25 bp)
TGGGAGGCCACGACAGCAGGCGCGA
LOC_Os02g13740
OsAffx.12025.1.S1_at--540--6231Chr02:7396584..7396608 (25 bp)
GATGGCACGACGATGGCAGCTAGCA
LOC_Os02g13740
OsAffx.12025.1.S1_at--780--1871Chr02:7396593..7396617 (25 bp)
ACGATGGCAGCTAGCACGGCAGAGT
LOC_Os02g13740
OsAffx.12025.1.S1_at--837--3711Chr02:7396603..7396627 (25 bp)
CTAGCACGGCAGAGTGGCCAGCAGC
LOC_Os02g13740
OsAffx.12025.1.S1_at--619--1631Chr02:7396705..7396729 (25 bp)
AGCCCAGTAAGGTGGCGCACGTGAA
LOC_Os02g13740
OsAffx.12025.1.S1_at--284--4591Chr02:7396719..7396743 (25 bp)
GCGCACGTGAAGACTGGCCGGCTGG
LOC_Os02g13740
OsAffx.12025.1.S1_at--1058--7711Chr02:7396756..7396780 (25 bp)
GGTGGTGCCCACACATCGACGTAGG
LOC_Os02g13740
OsAffx.12025.1.S1_at--366--4551Chr02:7396762..7396786 (25 bp)
GCCCACACATCGACGTAGGTTTAAA
LOC_Os02g13740
Target Sequence 
GTCAGATGCAGAGGCACGATAGGCTGCGGTCGGCGGTGGCAAGCGCAACAGCGCGGACGCATAGAGGCCGTGACGGCGGC
GGAGGCTTGGGAGGCCACGACAGCAGGCGCGACGGCGGCGCGTGCCTGGCCGGTGGCAAGTGCGGTGACTGTGGATGGCA
CGACGATGGCAGCTAGCACGGCAGAGTGGCCAGCAGCTGTGGGGTGCGAGGAGGGCGACGAGGCCGGTTGGTGTGCGGTG
GCTGCGCAGCGGGAGGTGAGGCCGGTGGAGGCTGAGCCCAGTAAGGTGGCGCACGTGAAGACTGGCCGGCTGGGGGCACC
GGTGCGGTGGTGCCCACACATCGACGTAGGTTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis