Browse Element(s) Details


OsAffx.12042.1.S1_s_at

Description tigr:9630.m01386
TID=OsAffx.12042.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=KE2 family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1486011/11KE2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14830OsAffx.12041.1.S1_at11/112+8240993..8242952hypothetical protein
LOC_Os02g14840Os.33370.1.S1_at10/112+8244346..8248443Potassium channel KAT1, putative, expressed
LOC_Os02g14850Os.55487.1.S1_at11/112+8256455..8257567expressed protein
LOC_Os02g14860OsAffx.12042.1.S1_s_at11/112+8262557..8265722KE2 family protein, expressed
LOC_Os02g14860Os.16117.1.S1_s_at11/112+8262557..8265722KE2 family protein, expressed
LOC_Os02g14870OsAffx.12043.1.S1_at11/112+8268232..8270188hypothetical protein
LOC_Os02g14880OsAffx.24261.1.S1_at11/112+8289301..8289687hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12042.1.S1_s_at--222--171Chr02:8265543..8265567 (25 bp)
ATTATTAGCTTGTGGTGGCTTCTGT
LOC_Os02g14860
OsAffx.12042.1.S1_s_at--474--4271Chr02:8265569..8265593 (25 bp)
CCTGGATTAGCTTTTCTTGTTTCTT
LOC_Os02g14860
OsAffx.12042.1.S1_s_at--657--4171Chr02:8265609..8265633 (25 bp)
CCCAGACTCCCAGTATTAGCATAAT
LOC_Os02g14860
OsAffx.12042.1.S1_s_at--933--5711Chr02:8265613..8265637 (25 bp)
GACTCCCAGTATTAGCATAATTGAT
LOC_Os02g14860
OsAffx.12042.1.S1_s_at--335--7411Chr02:8265638..8265662 (25 bp)
GTGATAATTGCATTTTTCCTGCCAT
LOC_Os02g14860
OsAffx.12042.1.S1_s_at--385--3171Chr02:8265643..8265667 (25 bp)
AATTGCATTTTTCCTGCCATCTGAG
LOC_Os02g14860
OsAffx.12042.1.S1_s_at--956--171Chr02:8265649..8265673 (25 bp)
ATTTTTCCTGCCATCTGAGCTTGTC
LOC_Os02g14860
OsAffx.12042.1.S1_s_at--395--10671Chr02:8265653..8265677 (25 bp)
TTCCTGCCATCTGAGCTTGTCTGAA
LOC_Os02g14860
OsAffx.12042.1.S1_s_at--728--9191Chr02:8265657..8265681 (25 bp)
TGCCATCTGAGCTTGTCTGAACTCT
LOC_Os02g14860
OsAffx.12042.1.S1_s_at--932--5911Chr02:8265665..8265689 (25 bp)
GAGCTTGTCTGAACTCTCAATTGAA
LOC_Os02g14860
OsAffx.12042.1.S1_s_at--973--3571Chr02:8265668..8265692 (25 bp)
CTTGTCTGAACTCTCAATTGAAGGG
LOC_Os02g14860
Target Sequence 
ATTATTAGCTTGTGGTGGCTTCTGTCCCTGGATTAGCTTTTCTTGTTTCTTTTCCTTTTGGGGCGTCCCAGACTCCCAGT
ATTAGCATAATTGATGTGATAATTGCATTTTTCCTGCCATCTGAGCTTGTCTGAACTCTCAATTGAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12042.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis