Browse Element(s) Details


OsAffx.12055.1.S1_at

Description tigr:9630.m01445
TID=OsAffx.12055.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1543010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15420OsAffx.20313.1.S1_x_at6/112+8626224..8628544hypothetical protein
LOC_Os02g15420OsAffx.18764.1.S1_at1/112+8626224..8628544hypothetical protein
LOC_Os02g15420OsAffx.6537.1.S1_at1/112+8626224..8628544hypothetical protein
LOC_Os02g15430OsAffx.12055.1.S1_at10/112+8640325..8644849hypothetical protein
LOC_Os02g15440OsAffx.2622.1.S1_at11/112+8652189..8652676hypothetical protein
LOC_Os02g15450OsAffx.24268.1.S1_at6/112+8657953..8658393hypothetical protein
LOC_Os02g15460Os.53422.1.S1_at11/112+8659225..8660520expressed protein
LOC_Os02g15460OsAffx.24268.1.S1_s_at11/112+8659225..8660520expressed protein
LOC_Os02g15460OsAffx.24268.1.S1_at1/112+8659225..8660520expressed protein
LOC_Os02g15470NANA2+8664543..8667607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15480NANA2+8669169..8671062transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12055.1.S1_at--94--7931Chr02:8641233..8641257 (25 bp)
GGATTAGTGGGCATGAGTTCAGATT
LOC_Os02g15430
OsAffx.12055.1.S1_at--519--4991Chr02:8641223..8641247 (25 bp)
GCATGAGTTCAGATTCGTGTATCCT
LOC_Os02g15430
OsAffx.12055.1.S1_at--789--6571Chr02:8641212..8641236 (25 bp)
GATTCGTGTATCCTGAAGATCCATT
LOC_Os02g15430
OsAffx.12055.1.S1_at--280--7431Chr02:8641207..8641231 (25 bp)
GTGTATCCTGAAGATCCATTATTCT
LOC_Os02g15430
OsAffx.12055.1.S1_at--473--6371Chr02:8641195..8641219 (25 bp)
GATCCATTATTCTTACTCAAATCTC
LOC_Os02g15430
OsAffx.12055.1.S1_at--816--9511Chr02:8641172..8641196 (25 bp)
TCTACAAGTAGTTCACAGAGGTGGT
LOC_Os02g15430
OsAffx.12055.1.S1_at--659--3311Chr02:8641159..8641183 (25 bp)
CACAGAGGTGGTATAATTTTCATTG
LOC_Os02g15430
OsAffx.12055.1.S1_at--166--5611Chr02:8641126..8641150 (25 bp)
GAAATTGCAGAATACACTCAAGATC
LOC_Os02g15430
OsAffx.12055.1.S1_at--40--10411Chr02:8641088..8641112 (25 bp)
TTTTGGTGTTGCACATTCTGGTAAC
LOC_Os02g15430
OsAffx.12055.1.S1_at--758--10591Chr02:8641073..8641097 (25 bp)
TTCTGGTAACAATGTGATTGCCATT
LOC_Os02g15430
OsAffx.12055.1.S1_at--604--6651NONE
GTTGAACAAGAGTTAGTCTACTTTA
NONE
Target Sequence 
GGATTAGTGGGCATGAGTTCAGATTCGTGTATCCTGAAGATCCATTATTCTTACTCAAATCTCTACAAGTAGTTCACAGA
GGTGGTATAATTTTCATTGTTATTGAAGAAATTGCAGAATACACTCAAGATCAAAGAGGAGAAGATTTTGGTGTTGCACA
TTCTGGTAACAATGTGATTGCCATTGTTGAACAAGAGTTAGTCTACTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis