Browse Element(s) Details


OsAffx.12055.2.S1_at

Description tigr:9630.m01451
TID=OsAffx.12055.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1550011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15450OsAffx.24268.1.S1_at6/112+8657953..8658393hypothetical protein
LOC_Os02g15460Os.53422.1.S1_at11/112+8659225..8660520expressed protein
LOC_Os02g15460OsAffx.24268.1.S1_s_at11/112+8659225..8660520expressed protein
LOC_Os02g15460OsAffx.24268.1.S1_at1/112+8659225..8660520expressed protein
LOC_Os02g15470NANA2+8664543..8667607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15480NANA2+8669169..8671062transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15490Os.47463.1.S1_x_at6/112+8671153..8674094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15490Os.14491.2.S1_x_at5/112+8671153..8674094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15500OsAffx.12055.2.S1_at11/112+8679388..8680777expressed protein
LOC_Os02g15510OsAffx.12056.1.S1_at10/112+8694018..8697791BED zinc finger family protein
LOC_Os02g15520OsAffx.12057.1.S1_at11/112+8700658..8702514hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12055.2.S1_at--8--3831Chr02:8680114..8680138 (25 bp)
CTGCCACTGGTGATACCTTGCGTGA
LOC_Os02g15500
OsAffx.12055.2.S1_at--140--6691Chr02:8680164..8680188 (25 bp)
GTTCGTGAACAAACGGTCGCCGCGA
LOC_Os02g15500
OsAffx.12055.2.S1_at--786--9331Chr02:8680180..8680204 (25 bp)
TCGCCGCGAGACATGTTCGACATAA
LOC_Os02g15500
OsAffx.12055.2.S1_at--52--8951Chr02:8680337..8680361 (25 bp)
TGACGAGCTACACGGTGCTTCTGTC
LOC_Os02g15500
OsAffx.12055.2.S1_at--367--2131Chr02:8680400..8680424 (25 bp)
ACAGGGCCGGCATAGTCGACAACAT
LOC_Os02g15500
OsAffx.12055.2.S1_at--303--7171Chr02:8680466..8680490 (25 bp)
GTCTCGGCGACTGCAGCACGATGAA
LOC_Os02g15500
OsAffx.12055.2.S1_at--655--1831Chr02:8680483..8680507 (25 bp)
ACGATGAACTACGATGACCACCTGT
LOC_Os02g15500
OsAffx.12055.2.S1_at--240--8991Chr02:8680529..8680553 (25 bp)
TGAAGCGGTACCACGACGCGAGCTG
LOC_Os02g15500
OsAffx.12055.2.S1_at--128--1831Chr02:8680544..8680568 (25 bp)
ACGCGAGCTGGCACAGGCACAAAGC
LOC_Os02g15500
OsAffx.12055.2.S1_at--889--8231Chr02:8680559..8680583 (25 bp)
GGCACAAAGCCAGGTTTCTGCGCGA
LOC_Os02g15500
OsAffx.12055.2.S1_at--901--8711Chr02:8680638..8680662 (25 bp)
TGTCTTTTCCCTATTCAACCAATTA
LOC_Os02g15500
Target Sequence 
CTGCCACTGGTGATACCTTGCGTGACCATGCTGCGCGAGGCGGGCGTCAGGTTCGTGAACAAACGGTCGCCGCGAGACAT
GTTCGACATAACGTTCGACAGCAACAAGGGCGTGCTGGAGTTGCCGCCCGTGGCGATCGACCAAGCCAGCCTCCCGCTGC
TGGTGAACCTCGTCGCCTTCGAGCAGAGCAGGGGGCACACCGGCGGCGCCGCCGCCGCGCCGCTGACGAGCTACACGGTG
CTTCTGTCGTCGCTCGTCAGGACAGGGGACGACGTGGACGAGCTGCACAGGGCCGGCATAGTCGACAACATGCTCTCCAA
CAACGACGACGCAGCGTCCGGCTTCTTCCAGCGTCTCGGCGACTGCAGCACGATGAACTACGATGACCACCTGTTCGGCG
CGCTCTTCGCCGGCGTGAAGCGGTACCACGACGCGAGCTGGCACAGGCACAAAGCCAGGTTTCTGCGCGACCACTGCAGC
AATCCATGGTCTGTCATCGCCTTGGGGCTCGCCGTGCTGGCATTTGTCTTTTCCCTATTCAACCAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12055.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis