Browse Element(s) Details


OsAffx.12141.1.S1_at

Description tigr:9630.m02012
TID=OsAffx.12141.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ca2+H+ exchanger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2100911/11Vacuolar cation/proton exchanger 1c, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20980OsAffx.3097.1.S1_s_at9/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.12010.1.S1_at7/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.12010.1.S1_x_at6/112+12414560..12421423hypothetical protein
LOC_Os02g20980OsAffx.3097.1.S1_x_at3/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.15211.1.S1_at3/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.43072.1.S1_x_at2/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.43072.1.S1_at2/112+12414560..12421423hypothetical protein
LOC_Os02g20990NANA2+12428182..12428559hypothetical protein
LOC_Os02g21009OsAffx.24357.1.S1_at11/112+12432283..12451253Vacuolar cation/proton exchanger 1c, putative, expressed
LOC_Os02g21009OsAffx.12141.1.S1_at11/112+12432283..12451253Vacuolar cation/proton exchanger 1c, putative, expressed
LOC_Os02g21030OsAffx.24358.1.S1_at11/112+12462366..12462976hypothetical protein
LOC_Os02g21040Os.5365.1.S1_at11/112+12464427..12466553Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g21050NANA2+12473377..12473610hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006793biological_processphosphorus metabolism
GO:0006812biological_processcation transport
GO:0006816biological_processcalcium ion transport
GO:0006874biological_processcalcium ion homeostasis
GO:0006882biological_processzinc ion homeostasis
GO:0030026biological_processmanganese ion homeostasis
GO:0051592biological_processresponse to calcium ion
GO:0005774cellular_componentvacuolar membrane
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0015368molecular_functioncalcium:cation antiporter activity
GO:0015369molecular_functioncalcium:hydrogen antiporter activity
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12141.1.S1_at--889--131Chr02:12442931..12442955 (25 bp)
ATTAATCATTGCACTGTTCGCTCTG
LOC_Os02g21009
OsAffx.12141.1.S1_at--1045--5091Chr02:12442941..12442965 (25 bp)
GCACTGTTCGCTCTGCATAAGAATA
LOC_Os02g21009
OsAffx.12141.1.S1_at--209--851Chr02:12442968..12442992 (25 bp)
ATGGAAATTCTCAAGTGGTCACTGT
LOC_Os02g21009
OsAffx.12141.1.S1_at--421--7831Chr02:12442984..12443008 (25 bp)
GGTCACTGTTAGGTTCCATCTTATC
LOC_Os02g21009
OsAffx.12141.1.S1_at--241--6731Chr02:12443029..12443053 (25 bp)
GTTCATCACTCCTCTTTGGAGGGAT
LOC_Os02g21009
OsAffx.12141.1.S1_at--275--10151Chr02:12443060..12443084 (25 bp)
TATCGGCAAGGAGCGTCCACTAGAT
LOC_Os02g21009
OsAffx.12141.1.S1_at--150--7071Chr02:12443182..12443206 (25 bp)
GTAAGCATAGGCCTTCTGTTGTTGG
LOC_Os02g21009
OsAffx.12141.1.S1_at--469--3871Chr02:12443197..12443221 (25 bp)
CTGTTGTTGGGTGTTCTTTGTCATA
LOC_Os02g21009
OsAffx.12141.1.S1_at--682--7131Chr02:12443216..12443240 (25 bp)
GTCATATTGCTACCCTAGTGTCTAA
LOC_Os02g21009
OsAffx.12141.1.S1_at--61--3091Chr02:12443240..12443264 (25 bp)
AATACACAAGTAGCACCGGAGATAG
LOC_Os02g21009
OsAffx.12141.1.S1_at--1025--5411Chr02:12443333..12443357 (25 bp)
GAAGCCTCATGTTCCAGTTGAAAAC
LOC_Os02g21009
Target Sequence 
ATTAATCATTGCACTGTTCGCTCTGCATAAGAATAAGATGGAAATTCTCAAGTGGTCACTGTTAGGTTCCATCTTATCAA
ATTTGTTACTTGTTCTTGGTTCATCACTCCTCTTTGGAGGGATCGTTAATATCGGCAAGGAGCGTCCACTAGATAAGAGA
CAAGCAGATGTAAGCATAGGCCTTCTGTTGTTGGGTGTTCTTTGTCATATTGCTACCCTAGTGTCTAAATACACAAGTAG
CACCGGAGATAGCATAAACTCAAGCTCAGTTATGCAATTATCAAGATCATGCGCTATAGTAATGCTAATTGCTTACTTTG
GAAGCCTCATGTTCCAGTTGAAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis