Browse Element(s) Details


OsAffx.12161.1.S1_at

Description tigr:9630.m02188
TID=OsAffx.12161.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2271011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22680OsAffx.24390.1.S1_at11/112+13505260..13507432Integral membrane protein DUF6 containing protein, expressed
LOC_Os02g22680Os.54088.1.S1_at1/112+13505260..13507432Integral membrane protein DUF6 containing protein, expressed
LOC_Os02g22690OsAffx.2717.1.S1_at9/112+13519332..13521711hypothetical protein
LOC_Os02g22690OsAffx.2717.1.S1_x_at9/112+13519332..13521711hypothetical protein
LOC_Os02g22690Os.54523.1.S1_at1/112+13519332..13521711hypothetical protein
LOC_Os02g22690OsAffx.25887.1.S1_at1/112+13519332..13521711hypothetical protein
LOC_Os02g22700OsAffx.8215.1.S1_at1/112+13522721..13527763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22700Os.47004.1.S1_at1/112+13522721..13527763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22710OsAffx.12161.1.S1_at11/112+13530080..13532078hypothetical protein
LOC_Os02g22720OsAffx.8356.1.S1_x_at2/112+13533243..13538609retrotransposon protein, putative, unclassified
LOC_Os02g22730NANA2+13539575..13540274retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22740NANA2+13540933..13542582retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22750OsAffx.2718.1.S1_at11/112+13544713..13545168hypothetical protein
LOC_Os02g22760OsAffx.20848.1.S1_x_at1/112+13547151..13552610retrotransposon protein, putative, LINE subclass, expressed
LOC_Os02g22760OsAffx.30273.1.S1_at1/112+13547151..13552610retrotransposon protein, putative, LINE subclass, expressed
LOC_Os02g22770OsAffx.24391.1.S1_at11/112+13555768..13556195hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12161.1.S1_at--723--7131Chr02:13531749..13531773 (25 bp)
GTCTTCCTCTTCGTGTCAATTCCAA
LOC_Os02g22710
OsAffx.12161.1.S1_at--1073--3631Chr02:13531741..13531765 (25 bp)
CTTCGTGTCAATTCCAAGCAGCAGC
LOC_Os02g22710
OsAffx.12161.1.S1_at--357--5611Chr02:13531649..13531673 (25 bp)
GACAAGATCATTAGCAGACGAATTC
LOC_Os02g22710
OsAffx.12161.1.S1_at--232--5051Chr02:13531636..13531660 (25 bp)
GCAGACGAATTCAAGTAGCAAGCAT
LOC_Os02g22710
OsAffx.12161.1.S1_at--28--9731Chr02:13531626..13531650 (25 bp)
TCAAGTAGCAAGCATGCACCATGGC
LOC_Os02g22710
OsAffx.12161.1.S1_at--628--651Chr02:13531613..13531637 (25 bp)
ATGCACCATGGCCAAGCGATCAGAC
LOC_Os02g22710
OsAffx.12161.1.S1_at--279--3371Chr02:13531610..13531634 (25 bp)
CACCATGGCCAAGCGATCAGACGGG
LOC_Os02g22710
OsAffx.12161.1.S1_at--326--5151Chr02:13531569..13531593 (25 bp)
GCAACAAGCATGCAACATGGTCAAT
LOC_Os02g22710
OsAffx.12161.1.S1_at--451--4991Chr02:13531562..13531586 (25 bp)
GCATGCAACATGGTCAATGAGAGGA
LOC_Os02g22710
OsAffx.12161.1.S1_at--630--9951Chr02:13530291..13530315 (25 bp)
TACGCCGCACGCTGAGAGCTTCGTC
LOC_Os02g22710
OsAffx.12161.1.S1_at--704--1351Chr02:13530277..13530301 (25 bp)
AGAGCTTCGTCCTTCACCTGGCTAG
LOC_Os02g22710
Target Sequence 
GTCTTCCTCTTCGTGTCAATTCCAAGCAGCAGCACCGTCAAGGCCACCGTCCGCACTACCAAGTCCAACGGCCTCCAGCT
CCACATCGTCACCGCCCGTCGACAAGATCATTAGCAGACGAATTCAAGTAGCAAGCATGCACCATGGCCAAGCGATCAGA
CGGGGACACATCATCACCAAGCAACAAGCATGCAACATGGTCAATGAGAGGAGGGGGCTTCACCACCCGTACCGCCTGGG
TGCCATGCCGCACGCCGGGGGCTTCGTCCTACACCCGGCTGGCACGCTTCGCCGACTTCGCCATGGGCTCGGGGGCTTCA
CCACCCTCACTGCCTGGGCGCTACGCCGCACGCTGAGAGCTTCGTCCTTCACCTGGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12161.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis