Browse Element(s) Details


OsAffx.25887.1.S1_at

Description tigr:9632.m00545
TID=OsAffx.25887.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0632011/11hypothetical protein
LOC_Os02g226901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06290Os.54691.1.S1_x_at2/114+3275679..3281299Zinc knuckle family protein
LOC_Os04g06290Os.51841.1.S1_x_at1/114+3275679..3281299Zinc knuckle family protein
LOC_Os04g06290OsAffx.27770.1.S1_x_at1/114+3275679..3281299Zinc knuckle family protein
LOC_Os04g06290OsAffx.17666.1.S1_at1/114+3275679..3281299Zinc knuckle family protein
LOC_Os04g06300OsAffx.13691.1.S1_at11/114+3283235..3285505hypothetical protein
LOC_Os04g06300Os.26930.1.S2_x_at1/114+3283235..3285505hypothetical protein
LOC_Os04g06310NANA4+3290496..3292074retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06320OsAffx.25887.1.S1_at11/114+3293351..3295204hypothetical protein
LOC_Os04g06320Os.54523.1.S1_at1/114+3293351..3295204hypothetical protein
LOC_Os04g06330NANA4+3296328..3296807retrotransposon protein, putative, unclassified
LOC_Os04g06340OsAffx.25888.2.S1_x_at7/114+3297254..3297974hypothetical protein
LOC_Os04g06340OsAffx.3727.1.S1_at3/114+3297254..3297974hypothetical protein
LOC_Os04g06340OsAffx.25888.1.S1_x_at2/114+3297254..3297974hypothetical protein
LOC_Os04g06350NANA4+3299263..3299833hypothetical protein
LOC_Os04g06360OsAffx.8473.1.S1_x_at3/114+3301443..3313498retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06360Os.45173.1.S1_x_at3/114+3301443..3313498retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06360Os.26999.1.A1_at2/114+3301443..3313498retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06360OsAffx.15708.1.S1_at1/114+3301443..3313498retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06360OsAffx.19857.1.S1_at1/114+3301443..3313498retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06360OsAffx.4839.1.S1_at1/114+3301443..3313498retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06360OsAffx.20733.1.A1_x_at1/114+3301443..3313498retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25887.1.S1_at--517--8651Chr04:3295098..3295122 (25 bp)
TGGGCACCCTGTTCAAAAAAGCAGG
LOC_Os04g06320
OsAffx.25887.1.S1_at--1047--2711Chr04:3295080..3295104 (25 bp)
AAGCAGGAGATGAGGTGGTCCACAA
LOC_Os04g06320
OsAffx.25887.1.S1_at--817--4331Chr04:3295029..3295053 (25 bp)
CCACTCCAAAGAAGGAACGGTTCTG
LOC_Os04g06320
OsAffx.25887.1.S1_at--265--2871Chr04:3295018..3295042 (25 bp)
AAGGAACGGTTCTGCATTCAGGGAG
LOC_Os04g06320
OsAffx.25887.1.S1_at--111--41911Chr12:11623127..11623607 (25 bp)
CCCTCCAATTGTCTGAACACCTGGA
NONE
OsAffx.25887.1.S1_at--123--5511Chr04:3294396..3294420 (25 bp)
GAACACCTGGAAGCACTATACACTG
LOC_Os04g06320
OsAffx.25887.1.S1_at--622--4271Chr04:3294391..3294415 (25 bp)
CCTGGAAGCACTATACACTGCAGAA
LOC_Os04g06320
OsAffx.25887.1.S1_at--532--2331Chr04:3294368..3294392 (25 bp)
AAAGTTGCTGAGGGATCAGGCGCCA
LOC_Os04g06320
OsAffx.25887.1.S1_at--161--4391Chr04:3294315..3294339 (25 bp)
CCAATCCTTCTCAATTTTCACAGGT
LOC_Os04g06320
OsAffx.25887.1.S1_at--562--3651Chr04:3294314..3294333 (20 bp)
CTTCTCAATTTTCACAGGTATGTCA
LOC_Os04g06320
OsAffx.25887.1.S1_at--11--10511Chr04:3293383..3293403 (21 bp)
TTCACAGGTATGTCACAGTTTGTCC
LOC_Os04g06320
Target Sequence 
TGGGCACCCTGTTCAAAAAAGCAGGAGATGAGGTGGTCCACAAGTACACCATGCCCACCGCTACTCCAACCACTCCAAAG
AAGGAACGGTTCTGCATTCAGGGAGTGCGAACTCCCGACGATGGGTATGGTAAAGGCTTGCTCCGGCCTTTGACAGCATC
GGAGAAGGAGGGGGCAGCGGAATCCCGTAGCCCTCCACTTATGAAGGTGAAGCGTCATTTGACGCCCCCCTCCAATTGTC
TGAACACCTGGAAGCACTATACACTGCAGAAAGTTGCTGAGGGATCAGGCGCCAGAGTGGTTCGGCCGAACCAAAGCTGG
CCCCAATCCTTCTCAATTTTCACAGGTATGTCACAGTTTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis