Browse Element(s) Details


OsAffx.4839.1.S1_at

Description tigr:9634.m01479
TID=OsAffx.4839.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1476010/11hypothetical protein
LOC_Os04g063601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14740Os.14167.1.S1_at11/116+8300781..8315924expressed protein
LOC_Os06g14750OsAffx.15432.1.S1_at11/116+8316768..8324556Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os06g14750OsAffx.17864.1.S1_x_at1/116+8316768..8324556Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os06g14760OsAffx.4839.1.S1_at10/116+8326555..8329839hypothetical protein
LOC_Os06g14760Os.10263.1.S1_at2/116+8326555..8329839hypothetical protein
LOC_Os06g14760Os.26999.1.A1_at2/116+8326555..8329839hypothetical protein
LOC_Os06g14760Os.49936.2.A1_at1/116+8326555..8329839hypothetical protein
LOC_Os06g14760Os.51841.1.S1_x_at1/116+8326555..8329839hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4839.1.S1_at--1052--2394Chr06:8327675..8327699 (25 bp)
AAAAATTCCAGACTATTTCGTGTAT
LOC_Os06g14760
OsAffx.4839.1.S1_at--1081--2271Chr06:8327701..8327725 (25 bp)
AAATCCCTATCCAGGAATCGGCCAG
LOC_Os06g14760
OsAffx.4839.1.S1_at--449--9451NONE
TCGGCCAGGTACGATTTATGACGTC
NONE
OsAffx.4839.1.S1_at--852--6991Chr06:8329309..8329333 (25 bp)
GTACGATTTATGACGTCAGCCGAGG
LOC_Os06g14760
OsAffx.4839.1.S1_at--640--1811Chr06:8329364..8329388 (25 bp)
ACCCATCGGTGACTCAAGGCAGCGG
LOC_Os06g14760
OsAffx.4839.1.S1_at--434--7371Chr06:8329372..8329396 (25 bp)
GTGACTCAAGGCAGCGGGCGCACCA
LOC_Os06g14760
OsAffx.4839.1.S1_at--332--2191Chr06:8329458..8329482 (25 bp)
ACAAAGACACCAACACGGGCCAGCA
LOC_Os06g14760
OsAffx.4839.1.S1_at--518--8531Chr06:8329496..8329520 (25 bp)
TGGACGGCCCAGATTCACCTGAAGT
LOC_Os06g14760
OsAffx.4839.1.S1_at--84--3371Chr06:8329511..8329535 (25 bp)
CACCTGAAGTGAATCGGGTTGCCAT
LOC_Os06g14760
OsAffx.4839.1.S1_at--883--1031Chr06:8329545..8329569 (25 bp)
AGGTGGCAAGGCTCACCGGCATAGC
LOC_Os06g14760
OsAffx.4839.1.S1_at--713--4832Chr10:9741325..9741349 (25 bp)
GCTCACCGAGCGCACAAGGCAAGGA
NONE
Target Sequence 
AAAAATTCCAGACTATTTCGTGTATTAAATCCCTATCCAGGAATCGGCCAGGTACGATTTATGACGTCAGCCGAGGGGAA
AGAGGCGGCGTCGACAAGCGGGCCCCACCCATCGGTGACTCAAGGCAGCGGGCGCACCACGTGGCGACCACGTGGCGGCC
ACGGTGGACAAGCGGGCAGAGGTGGCGCCGACGTGGCGCCACAAAGACACCAACACGGGCCAGCACCGGGAGGCCACGTG
GACGGCCCAGATTCACCTGAAGTGAATCGGGTTGCCATGGGCGAGCGAGGTGGCAAGGCTCACCGGCATAGCGGCCGGGA
GATGGTGGCGCCTGGCCCGATGGTCGCCGACGACGACTACCGGCACGGCGGCACGCGCGGGAGGCAGCCGAGAGAGGGGA
TAAGGGAGGGGAGACGAAGGGGTGCTCACCGAGCGCACAAGGCAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis