Browse Element(s) Details


OsAffx.15432.1.S1_at

Description tigr:9634.m01478
TID=OsAffx.15432.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Phosphatidylinositol-4-phosphate 5-Kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1475011/11Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14720NANA6+8293715..8294335retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g14730OsAffx.24046.3.S1_x_at11/116+8297393..8299635Transposase, putative
LOC_Os06g14730OsAffx.24046.7.S1_x_at6/116+8297393..8299635Transposase, putative
LOC_Os06g14730OsAffx.24046.5.S1_x_at2/116+8297393..8299635Transposase, putative
LOC_Os06g14730OsAffx.24046.2.S1_x_at1/116+8297393..8299635Transposase, putative
LOC_Os06g14740Os.14167.1.S1_at11/116+8300781..8315924expressed protein
LOC_Os06g14750OsAffx.15432.1.S1_at11/116+8316768..8324556Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os06g14750OsAffx.17864.1.S1_x_at1/116+8316768..8324556Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os06g14760OsAffx.4839.1.S1_at10/116+8326555..8329839hypothetical protein
LOC_Os06g14760Os.10263.1.S1_at2/116+8326555..8329839hypothetical protein
LOC_Os06g14760Os.26999.1.A1_at2/116+8326555..8329839hypothetical protein
LOC_Os06g14760Os.49936.2.A1_at1/116+8326555..8329839hypothetical protein
LOC_Os06g14760Os.51841.1.S1_x_at1/116+8326555..8329839hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15432.1.S1_at--1022--2991Chr06:8318722..8318742 (21 bp)
AATGATACTTCTTTTCTGGCGTCGG
LOC_Os06g14750
OsAffx.15432.1.S1_at--1155--6251Chr06:8317254..8317278 (25 bp)
GATGGGAATCATCGACTACCTTCGT
LOC_Os06g14750
OsAffx.15432.1.S1_at--373--2031Chr06:8317240..8317264 (25 bp)
ACTACCTTCGTCAGTACACCTGGGA
LOC_Os06g14750
OsAffx.15432.1.S1_at--697--5991Chr06:8317165..8317189 (25 bp)
GAGACGTGCTCCCAACTATCATTTC
LOC_Os06g14750
OsAffx.15432.1.S1_at--1039--10111Chr06:8317149..8317173 (25 bp)
TATCATTTCCCCAGACCAGTACAAG
LOC_Os06g14750
OsAffx.15432.1.S1_at--1109--6491Chr06:8317043..8317067 (25 bp)
GATATCCAAGCATCAGACGCATCCA
LOC_Os06g14750
OsAffx.15432.1.S1_at--974--5792Chr06:8317028..8317052 (25 bp)
GACGCATCCAGACGGTTCAAGTGCA
LOC_Os06g14750
OsAffx.15432.1.S1_at--685--1151Chr06:8316924..8316948 (25 bp)
AGTCGATCCTATTGTGCCTTGTGTA
LOC_Os06g14750
OsAffx.15432.1.S1_at--467--6791Chr06:8316898..8316922 (25 bp)
GTTATTTTTGTCACAACGGGCAGGA
LOC_Os06g14750
OsAffx.15432.1.S1_at--540--8551Chr06:8316861..8316885 (25 bp)
TGGAGAGGGCTGACGCCGATCAATC
LOC_Os06g14750
OsAffx.15432.1.S1_at--485--8251Chr06:8316834..8316858 (25 bp)
GGCAGCCTAGAGATCAATACGTGTA
LOC_Os06g14750
Target Sequence 
AATGATACTTCTTTTCTGGCGTCGGTGGATGTGATGGATTACTCACTATTAGTTGGCATTGATGAAGAAAGCAAAGAGCT
TGTGATGGGAATCATCGACTACCTTCGTCAGTACACCTGGGACAAGCAGCTGGAGACCTGGGTGAAGGCGTCAGGGTTCC
TGGGTGGCTCCAGAGACGTGCTCCCAACTATCATTTCCCCAGACCAGTACAAGAAGAGGTTCAGGAAGGCCATGTCGAGG
TACTTCCTGACTGTCCCTGACCAATGGTCATCTTGATGTCTCGATGCCATTGATGATATCCAAGCATCAGACGCATCCAG
ACGGTTCAAGTGCAAAATGGAATGATGGGAGAAGAACATGCCGTTCGTTTTTTTTTTCTTAACTTTCTTTTTTCGTTTTT
TTTTTGTTAGAATAGTCGATCCTATTGTGCCTTGTGTATGTTATTTTTGTCACAACGGGCAGGATCGAGAGCTCCCTGGA
GAGGGCTGACGCCGATCAATCCAGGCAGCCTAGAGATCAATACGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis