Browse Element(s) Details


Os.26930.1.S2_x_at

Description gb:AK103818.1
DB_XREF= gi:32989027
TID=Os.26930.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26930 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033147F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033147F20, full insert sequence.
FL= gb:AK103818.1 gb:AK062543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0659011/11expressed protein
LOC_Os04g060501/11hypothetical protein
LOC_Os04g063001/11hypothetical protein
LOC_Os04g065101/11hypothetical protein
LOC_Os04g065001/11hypothetical protein
LOC_Os04g067001/11hypothetical protein
LOC_Os04g071101/11expressed protein
LOC_Os04g072601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06550NANA4+3432441..3435185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06560Os.40360.1.S1_at8/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.2.S1_x_at7/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40360.1.S1_x_at7/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.4.S1_x_at4/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.4.S1_at1/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.5.S1_x_at1/114+3438150..3440023hypothetical protein
LOC_Os04g06580NANA4+3450136..3450606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06590Os.26930.1.S2_x_at11/114+3452396..3457830expressed protein
LOC_Os04g06590OsAffx.25891.1.S1_at11/114+3452396..3457830expressed protein
LOC_Os04g06590Os.26930.1.S1_x_at11/114+3452396..3457830expressed protein
LOC_Os04g06590Os.25740.1.S1_at1/114+3452396..3457830expressed protein
LOC_Os04g06590Os.46050.1.A1_x_at1/114+3452396..3457830expressed protein
LOC_Os04g06600NANA4+3464714..3467606retrotransposon protein, putative, unclassified
LOC_Os04g06610NANA4+3467928..3473315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06620NANA4+3474945..3475736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06630Os.46306.1.S1_x_at2/114+3478780..3482974transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26930.1.S2_x_at--643--7611Chr04:3456692..3456716 (25 bp)
GGGAATACTTGAGCTCTGTGGTGAA
LOC_Os04g06590
Os.26930.1.S2_x_at--299--8031Chr04:3456744..3456768 (25 bp)
GGAGTACGAGTACCACAACTTGAGG
LOC_Os04g06590
Os.26930.1.S2_x_at--869--2551Chr04:3456908..3456932 (25 bp)
AACTGCTGATGATGCTTCCTGAGCA
LOC_Os04g06590
Os.26930.1.S2_x_at--1071--4911Chr04:3456921..3456945 (25 bp)
GCTTCCTGAGCATCACAATGTTGAG
LOC_Os04g06590
Os.26930.1.S2_x_at--1030--5392Chr04:3456964..3456988 (25 bp)
GAAGCTCTGGATTTTCTTCCTGAAT
LOC_Os04g06590
Os.26930.1.S2_x_at--744--531Chr04:3457015..3457039 (25 bp)
ATCGCTACGGATATTGTCTTCATGT
LOC_Os04g06590
Os.26930.1.S2_x_at--48--2451Chr04:3457055..3457079 (25 bp)
AAAATGCAGCATCGTCCAAGTCCAA
LOC_Os04g06590
Os.26930.1.S2_x_at--806--7937Chr04:3457110..3457134 (25 bp)
GGATTACATGATGTTCCTCGTCGCG
LOC_Os04g06590
Os.26930.1.S2_x_at--782--611Chr04:3457147..3457171 (25 bp)
ATGCTACCTGGTCTTAAGCTGCGCA
LOC_Os04g06590
Os.26930.1.S2_x_at--742--9151Chr04:3457166..3457190 (25 bp)
TGCGCAGCCTGTACGAAGCTACTAA
LOC_Os04g06590
Os.26930.1.S2_x_at--419--4831Chr04:3457183..3457207 (25 bp)
GCTACTAAGGAAGCTCTTGCCAAAA
LOC_Os04g06590
Target Sequence 
GGGAATACTTGAGCTCTGTGGTGAAGAAAGTAGCATCGGAGGGCATGTGGATGGAGTACGAGTACCACAACTTGAGGGGT
ATTCATATTTCACAGGATTTCAAGAAGAAATTGTTGGATTGTATTTGGGACTATATGTATTTAGCATACCCAGTTGAAGA
CATGGAGGAGGTGGAGGAGGAGGAGAAGAAGAAGAAAGAGGCGGAGAAGAAGCCAAAACTGCTGATGATGCTTCCTGAGC
ATCACAATGTTGAGAACATTCGGAAATTGGAAGAAGCTCTGGATTTTCTTCCTGAATTTCAGGAGTCCATTCTTATCATG
CACATCGCTACGGATATTGTCTTCATGTATACTAAATTTGAACAAAATGCAGCATCGTCCAAGTCCAAAGACAATGTGAA
GATGATCAAGGCCTTGTCGGATTACATGATGTTCCTCGTCGCGGTGCGACCCACCATGCTACCTGGTCTTAAGCTGCGCA
GCCTGTACGAAGCTACTAAGGAAGCTCTTGCCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26930.1.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis