Browse Element(s) Details


OsAffx.25891.1.S1_at

Description tigr:9632.m00572
TID=OsAffx.25891.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0659011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06550NANA4+3432441..3435185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06560Os.40360.1.S1_at8/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.2.S1_x_at7/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40360.1.S1_x_at7/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.4.S1_x_at4/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.4.S1_at1/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.5.S1_x_at1/114+3438150..3440023hypothetical protein
LOC_Os04g06580NANA4+3450136..3450606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06590Os.26930.1.S2_x_at11/114+3452396..3457830expressed protein
LOC_Os04g06590OsAffx.25891.1.S1_at11/114+3452396..3457830expressed protein
LOC_Os04g06590Os.26930.1.S1_x_at11/114+3452396..3457830expressed protein
LOC_Os04g06590Os.25740.1.S1_at1/114+3452396..3457830expressed protein
LOC_Os04g06590Os.46050.1.A1_x_at1/114+3452396..3457830expressed protein
LOC_Os04g06600NANA4+3464714..3467606retrotransposon protein, putative, unclassified
LOC_Os04g06610NANA4+3467928..3473315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06620NANA4+3474945..3475736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06630Os.46306.1.S1_x_at2/114+3478780..3482974transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25891.1.S1_at--1027--5691Chr04:3457363..3457387 (25 bp)
GACTATACAACCGATCTTTACAACG
LOC_Os04g06590
OsAffx.25891.1.S1_at--711--9111Chr04:3457430..3457454 (25 bp)
TGCTGCAATGGCTACATGGTAATTG
LOC_Os04g06590
OsAffx.25891.1.S1_at--58--7031Chr04:3457448..3457472 (25 bp)
GTAATTGCTGGGTCAAATTTCCCGA
LOC_Os04g06590
OsAffx.25891.1.S1_at--432--4711Chr04:3457454..3457478 (25 bp)
GCTGGGTCAAATTTCCCGAATGTGA
LOC_Os04g06590
OsAffx.25891.1.S1_at--709--4211Chr04:3457469..3457493 (25 bp)
CCGAATGTGAATACTCTTACGAGGC
LOC_Os04g06590
OsAffx.25891.1.S1_at--878--5571Chr04:3457525..3457549 (25 bp)
GAAATCCTGAACGAGCGGCCGATGT
LOC_Os04g06590
OsAffx.25891.1.S1_at--805--6371Chr04:3457695..3457719 (25 bp)
GATCCTGGTTGAACACGCTGGCTTA
LOC_Os04g06590
OsAffx.25891.1.S1_at--770--7891Chr04:3457701..3457725 (25 bp)
GGTTGAACACGCTGGCTTATTCCGC
LOC_Os04g06590
OsAffx.25891.1.S1_at--895--4871Chr04:3457715..3457739 (25 bp)
GCTTATTCCGCGTTGACCGTCAAAA
LOC_Os04g06590
OsAffx.25891.1.S1_at--1061--9791Chr04:3457750..3457774 (25 bp)
TAACTGTTTGTTGCTTCCTACTGAA
LOC_Os04g06590
OsAffx.25891.1.S1_at--714--10791Chr04:3457757..3457781 (25 bp)
TTGTTGCTTCCTACTGAATCGAGGG
LOC_Os04g06590
Target Sequence 
GACTATACAACCGATCTTTACAACGTTAGTATTGTTCTGTCAGATGGGATTAAACTAGCTGATCATTTGCTGCAATGGCT
ACATGGTAATTGCTGGGTCAAATTTCCCGAATGTGAATACTCTTACGAGGCAAAATTTGCACAGATGTTTCCGAAATTGA
GGGAAATCCTGAACGAGCGGCCGATGTCCGACCACCCCGATAAATGGTCGCAACTGTTGGAACACATCTTCTTGGAGTGG
GTGCGTCTGCTGATTAACGCGTCCGTCAAGTGTACAAGAGATTCTCACGCCAAGCAGCTCAGCCGTGGTGGTGAGCTCAC
CACCATCGTTTGGATCCTGGTTGAACACGCTGGCTTATTCCGCGTTGACCGTCAAAAGAGATGAAATTAACTGTTTGTTG
CTTCCTACTGAATCGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis