Browse Element(s) Details


OsAffx.3727.1.S1_at

Description tigr:9632.m00466
TID=OsAffx.3727.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0555011/11hypothetical protein
LOC_Os04g063403/11hypothetical protein
LOC_Os04g065302/11hypothetical protein
LOC_Os04g055001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g05490OsAffx.18439.1.S1_s_at11/114+2763893..2764694hypothetical protein
LOC_Os04g05490OsAffx.20711.1.S1_x_at1/114+2763893..2764694hypothetical protein
LOC_Os04g05500OsAffx.25888.1.S1_x_at2/114+2768371..2769096hypothetical protein
LOC_Os04g05500OsAffx.25888.2.S1_x_at2/114+2768371..2769096hypothetical protein
LOC_Os04g05500OsAffx.3727.1.S1_at1/114+2768371..2769096hypothetical protein
LOC_Os04g05510NANA4+2772337..2772777transposon protein, putative, unclassified
LOC_Os04g05520NANA4+2774541..2780696transposon protein, putative, unclassified
LOC_Os04g05530NANA4+2781332..2784567transposon protein, putative, unclassified
LOC_Os04g05540OsAffx.7633.1.S1_at1/114+2786787..2788482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g05550OsAffx.3727.1.S1_at11/114+2789616..2790100hypothetical protein
LOC_Os04g05550OsAffx.25888.2.S1_x_at1/114+2789616..2790100hypothetical protein
LOC_Os04g05560OsAffx.25876.1.S1_at11/114+2796189..2798730Protein kinase domain containing protein
LOC_Os04g05570OsAffx.32023.1.S1_at11/114+2805543..2809038transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g05580Os.54167.1.S1_at11/114+2813295..2817621Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3727.1.S1_at--1030--7831Chr04:2789768..2789792 (25 bp)
GGTACAAATCTGGATTACACCTGGA
LOC_Os04g05550
OsAffx.3727.1.S1_at--242--3011Chr04:2789762..2789786 (25 bp)
AATCTGGATTACACCTGGAGTGCAT
LOC_Os04g05550
OsAffx.3727.1.S1_at--11--6571Chr04:2789756..2789780 (25 bp)
GATTACACCTGGAGTGCATCCCTGA
LOC_Os04g05550
OsAffx.3727.1.S1_at--1113--2151Chr04:2789752..2789776 (25 bp)
ACACCTGGAGTGCATCCCTGAATGA
LOC_Os04g05550
OsAffx.3727.1.S1_at--1089--1751Chr04:2789750..2789774 (25 bp)
ACCTGGAGTGCATCCCTGAATGAAG
LOC_Os04g05550
OsAffx.3727.1.S1_at--78--1131Chr04:2789744..2789768 (25 bp)
AGTGCATCCCTGAATGAAGGACGCA
LOC_Os04g05550
OsAffx.3727.1.S1_at--913--2071Chr04:2789680..2789704 (25 bp)
ACATTTTCTCCCAATCGAAGGTCTG
LOC_Os04g05550
OsAffx.3727.1.S1_at--590--171Chr04:2789678..2789702 (25 bp)
ATTTTCTCCCAATCGAAGGTCTGCT
LOC_Os04g05550
OsAffx.3727.1.S1_at--634--5312Chr04:3297526..3297550 (25 bp)
GAAGGTCTGCTGTAGAAATGTATGC
LOC_Os04g06340
OsAffx.3727.1.S1_at--36--5595Chr04:3349446..3349469 (24 bp)
GAAATGTATGCTACCCTAGCTTGCA
NONE
OsAffx.3727.1.S1_at--229--8776Chr04:3349449..3349473 (25 bp)
TGTATGCTACCCTAGCTTGCAAGCC
NONE
Target Sequence 
GGTACAAATCTGGATTACACCTGGAGTGCATCCCTGAATGAAGGACGCAACAATGTCAATATAAATGGTTTGGTGCCCGT
ACCATGCAACATTTTCTCCCAATCGAAGGTCTGCTGTAGAAATGTATGCTACCCTAGCTTGCAAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis