Browse Element(s) Details


OsAffx.18439.1.S1_s_at

Description tigr:9638.m02482
TID=OsAffx.18439.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0549011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g05470NANA4+2739856..2746025Protein kinase domain containing protein
LOC_Os04g05480NANA4+2759425..2760360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g05490OsAffx.18439.1.S1_s_at11/114+2763893..2764694hypothetical protein
LOC_Os04g05490OsAffx.20711.1.S1_x_at1/114+2763893..2764694hypothetical protein
LOC_Os04g05500OsAffx.25888.1.S1_x_at2/114+2768371..2769096hypothetical protein
LOC_Os04g05500OsAffx.25888.2.S1_x_at2/114+2768371..2769096hypothetical protein
LOC_Os04g05500OsAffx.3727.1.S1_at1/114+2768371..2769096hypothetical protein
LOC_Os04g05510NANA4+2772337..2772777transposon protein, putative, unclassified
LOC_Os04g05520NANA4+2774541..2780696transposon protein, putative, unclassified
LOC_Os04g05530NANA4+2781332..2784567transposon protein, putative, unclassified
LOC_Os04g05540OsAffx.7633.1.S1_at1/114+2786787..2788482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g05550OsAffx.3727.1.S1_at11/114+2789616..2790100hypothetical protein
LOC_Os04g05550OsAffx.25888.2.S1_x_at1/114+2789616..2790100hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18439.1.S1_s_at--640--10313Chr04:2763934..2763958 (25 bp)
TTTCTCTCTCTCGTTCTTTTCCTAT
LOC_Os04g05490
OsAffx.18439.1.S1_s_at--216--10576Chr11:12101759..12101791 (24 bp)
TTCTTTTCCTATCGTCTTCTACCTC
NONE
OsAffx.18439.1.S1_s_at--1159--10552Chr04:2763963..2763987 (25 bp)
TTCTACCTCCAGACCGTGCGGGAGC
LOC_Os04g05490
OsAffx.18439.1.S1_s_at--875--2774Chr04:2764250..2764274 (25 bp)
AAGAGCTCCGGGATGGCTTGTCCAC
LOC_Os04g05490
OsAffx.18439.1.S1_s_at--714--6232Chr04:2764261..2764285 (25 bp)
GATGGCTTGTCCACGGCAAGCTCGC
LOC_Os04g05490
OsAffx.18439.1.S1_s_at--927--9932Chr04:2764318..2764342 (25 bp)
TACGGGCGCTAGTCGCCGAAATTGA
LOC_Os04g05490
OsAffx.18439.1.S1_s_at--227--7952Chr04:2764344..2764368 (25 bp)
GGAGGCTCGAGTTTCTACGGAACCA
LOC_Os04g05490
OsAffx.18439.1.S1_s_at--1125--6812Chr04:2764354..2764378 (25 bp)
GTTTCTACGGAACCAGGAGAGACCT
LOC_Os04g05490
OsAffx.18439.1.S1_s_at--982--5812Chr04:2764374..2764398 (25 bp)
GACCTGAGGAGCGTGGACTTACCGA
LOC_Os04g05490
OsAffx.18439.1.S1_s_at--913--1992Chr04:2764389..2764413 (25 bp)
GACTTACCGATAGACGGCGGGACGA
LOC_Os04g05490
OsAffx.18439.1.S1_s_at--287--5976Chr11:8873413..8873713 (25 bp)
GAGAAGAAGGTGCAGCACGCCCACA
NONE
Target Sequence 
TTTCTCTCTCTCGTTCTTTTCCTATCGTCTTCTACCTCCAGACCGTGCGGGAGCAGCAGGGGCGGCGCAGCGCGCGCGGC
AAGGCCGGCGGAGGGCGACCCGACGGCGACCAGGGGAGGGAGCGGCAAGGCTCCGGCGTCCACCTGCCGGCGGTCACGGC
ATGGCTAGGAAGAGCTCCGGGATGGCTTGTCCACGGCAAGCTCGCCGGCGGCATAATGGTGGCCGGGCCAGCACGGCTAC
GGGCGCTAGTCGCCGAAATTGAAGGAGGCTCGAGTTTCTACGGAACCAGGAGAGACCTGAGGAGCGTGGACTTACCGATA
GACGGCGGGACGACGAAGATCGGGTGCAGTGGTGGAGCGGAGAAGAAGGTGCAGCACGCCCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18439.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis