Browse Element(s) Details


OsAffx.25888.1.S1_x_at

Description tigr:9632.m00562
TID=OsAffx.25888.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0649011/11hypothetical protein
LOC_Os04g055002/11hypothetical protein
LOC_Os04g063402/11hypothetical protein
LOC_Os04g065301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06430NANA4+3364052..3368471retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06390NANA4+3371107..3372456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06380Os.45721.1.S1_x_at1/114+3373225..3375804retrotransposon protein, putative, unclassified
LOC_Os04g06429NANA4+3377737..3379721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06480NANA4+3381963..3383171retrotransposon protein, putative, unclassified
LOC_Os04g06490OsAffx.25888.1.S1_x_at11/114+3391756..3392774hypothetical protein
LOC_Os04g06490OsAffx.25888.2.S1_x_at4/114+3391756..3392774hypothetical protein
LOC_Os04g06490Os.51348.1.S1_x_at2/114+3391756..3392774hypothetical protein
LOC_Os04g06530OsAffx.25888.2.S1_x_at11/114+3394549..3395237hypothetical protein
LOC_Os04g06530OsAffx.3727.1.S1_at2/114+3394549..3395237hypothetical protein
LOC_Os04g06530OsAffx.25888.1.S1_x_at1/114+3394549..3395237hypothetical protein
LOC_Os04g06520Os.6075.1.S1_at11/114+3397874..3399582expressed protein
LOC_Os04g06520Os.6075.1.S2_at11/114+3397874..3399582expressed protein
LOC_Os04g06510OsAffx.25891.2.S1_at10/114+3404604..3406890hypothetical protein
LOC_Os04g06510Os.26930.1.S2_x_at1/114+3404604..3406890hypothetical protein
LOC_Os04g06500OsAffx.25892.1.S1_at11/114+3411608..3414314hypothetical protein
LOC_Os04g06500Os.26930.1.S2_x_at1/114+3411608..3414314hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25888.1.S1_x_at--638--9075Chr04:3395176..3395200 (25 bp)
TGCTTCTGTTGTTGGCCCTTCTAGG
LOC_Os04g06530
OsAffx.25888.1.S1_x_at--849--10094Chr04:3392692..3392716 (25 bp)
TAGGCTGTTTTAGCATTCCTGGCCA
LOC_Os04g06490
OsAffx.25888.1.S1_x_at--937--43720Chr12:6170642..6170666 (25 bp)
CCAAAGCCGAGTACTTCAATCATCT
NONE
OsAffx.25888.1.S1_x_at--251--26720Chr12:6170645..6170669 (25 bp)
AAGCCGAGTACTTCAATCATCTTTG
NONE
OsAffx.25888.1.S1_x_at--435--45126Chr12:6170647..6170671 (25 bp)
GCCGAGTACTTCAATCATCTTTGCC
NONE
OsAffx.25888.1.S1_x_at--352--60946Chr12:6170650..6170674 (25 bp)
GAGTACTTCAATCATCTTTGCCATG
NONE
OsAffx.25888.1.S1_x_at--947--70130Chr12:6170652..6170676 (25 bp)
GTACTTCAATCATCTTTGCCATGGT
NONE
OsAffx.25888.1.S1_x_at--519--105167Chr12:6170656..6170680 (25 bp)
TTCAATCATCTTTGCCATGGTCTCC
NONE
OsAffx.25888.1.S1_x_at--325--30765Chr12:6170659..6170683 (25 bp)
AATCATCTTTGCCATGGTCTCCCGA
NONE
OsAffx.25888.1.S1_x_at--127--4564Chr12:6170663..6170687 (25 bp)
ATCTTTGCCATGGTCTCCCGAGTAC
NONE
OsAffx.25888.1.S1_x_at--501--36757Chr12:6170665..6170689 (25 bp)
CTTTGCCATGGTCTCCCGAGTACTT
NONE
Target Sequence 
TGCTTCTGTTGTTGGCCCTTCTAGGCTGTTTTAGCATTCCTGGCCANNTGTATGGTAANAATCTNGATTACACCAGGAGT
GCNNCCATGAATGAAGGACGCAACAATGTCAATATAAATGGTTTGGTACCNGTACCANGCAACATTTTCTCCCCATCGAA
GNTTNNNCCAAAGCCGAGTACTTCAATCATCTTTGCCATGGTCTCCCGAGTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25888.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis