Browse Element(s) Details


Os.6075.1.S1_at

Description gb:AK062765.1
DB_XREF= gi:32972783
TID=Os.6075.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-H07, full insert sequence.
FL= gb:AK062765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0652011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06380Os.45721.1.S1_x_at1/114+3373225..3375804retrotransposon protein, putative, unclassified
LOC_Os04g06429NANA4+3377737..3379721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06480NANA4+3381963..3383171retrotransposon protein, putative, unclassified
LOC_Os04g06490OsAffx.25888.1.S1_x_at11/114+3391756..3392774hypothetical protein
LOC_Os04g06490OsAffx.25888.2.S1_x_at4/114+3391756..3392774hypothetical protein
LOC_Os04g06490Os.51348.1.S1_x_at2/114+3391756..3392774hypothetical protein
LOC_Os04g06530OsAffx.25888.2.S1_x_at11/114+3394549..3395237hypothetical protein
LOC_Os04g06530OsAffx.3727.1.S1_at2/114+3394549..3395237hypothetical protein
LOC_Os04g06530OsAffx.25888.1.S1_x_at1/114+3394549..3395237hypothetical protein
LOC_Os04g06520Os.6075.1.S1_at11/114+3397874..3399582expressed protein
LOC_Os04g06520Os.6075.1.S2_at11/114+3397874..3399582expressed protein
LOC_Os04g06510OsAffx.25891.2.S1_at10/114+3404604..3406890hypothetical protein
LOC_Os04g06510Os.26930.1.S2_x_at1/114+3404604..3406890hypothetical protein
LOC_Os04g06500OsAffx.25892.1.S1_at11/114+3411608..3414314hypothetical protein
LOC_Os04g06500Os.26930.1.S2_x_at1/114+3411608..3414314hypothetical protein
LOC_Os04g06540OsAffx.13693.1.S1_at11/114+3424260..3425632hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6075.1.S1_at--192--9391Chr04:3399494..3399518 (25 bp)
TCGATCTTGCACTTGTCTCCGACTT
LOC_Os04g06520
Os.6075.1.S1_at--935--10771Chr04:3399482..3399506 (25 bp)
TTGTCTCCGACTTCCTTCTCGTTTT
LOC_Os04g06520
Os.6075.1.S1_at--394--4311Chr04:3399469..3399493 (25 bp)
CCTTCTCGTTTTTGTTTCATTCCAT
LOC_Os04g06520
Os.6075.1.S1_at--710--72Chr04:3399453..3399475 (23 bp)
ATTCCATAGCTGAAGCAAAATGGGT
LOC_Os04g06520
Os.6075.1.S1_at--191--5731Chr04:3399293..3399317 (25 bp)
GACTGAGGTCAAGAATGTACTTCGT
LOC_Os04g06520
Os.6075.1.S1_at--379--2731Chr04:3399283..3399307 (25 bp)
AAGAATGTACTTCGTCAAGAATTCA
LOC_Os04g06520
Os.6075.1.S1_at--1016--3691Chr04:3399104..3399128 (25 bp)
CTATCGAGTATAGAAACTACAGCAA
LOC_Os04g06520
Os.6075.1.S1_at--513--7611Chr04:3399027..3399051 (25 bp)
GGGAAGCTGTACGAACGCCTCAAGA
LOC_Os04g06520
Os.6075.1.S1_at--653--6991Chr04:3399019..3399043 (25 bp)
GTACGAACGCCTCAAGAAGATGGCA
LOC_Os04g06520
Os.6075.1.S1_at--493--7071Chr04:3398988..3399012 (25 bp)
GTCAAGATTGAATCGGTTATTCCGG
LOC_Os04g06520
Os.6075.1.S1_at--51--9431Chr04:3398869..3399000 (25 bp)
TCGGTTATTCCGGATGATGTAAAGG
LOC_Os04g06520
Target Sequence 
TCGATCTTGCACTTGTCTCCGACTTCCTTCTCGTTTTTGTTTCATTCCATAGCTGAAGCAAAATGGGTGACAAGAAACAA
GTGAAGCTAAAGGTTCGGGGTGCAAGCGAGACTGAGGTCAAGAATGTACTTCGTCAAGAATTCAAAGAATCTATCGAGTA
TAGAAACTACAGCAAAAATCCAGAGAGCAGCAGTTTGAAGGTGGAGGTGCGAGGGACTGTGGATGTGGGGAAGCTGTACG
AACGCCTCAAGAAGATGGCATCCAGTGTCAAGATTGAATCGGTTATTCCGGATGATGTAAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis