Browse Element(s) Details


OsAffx.25891.2.S1_at

Description tigr:9632.m00564
TID=OsAffx.25891.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0651010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06429NANA4+3377737..3379721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06480NANA4+3381963..3383171retrotransposon protein, putative, unclassified
LOC_Os04g06490OsAffx.25888.1.S1_x_at11/114+3391756..3392774hypothetical protein
LOC_Os04g06490OsAffx.25888.2.S1_x_at4/114+3391756..3392774hypothetical protein
LOC_Os04g06490Os.51348.1.S1_x_at2/114+3391756..3392774hypothetical protein
LOC_Os04g06530OsAffx.25888.2.S1_x_at11/114+3394549..3395237hypothetical protein
LOC_Os04g06530OsAffx.3727.1.S1_at2/114+3394549..3395237hypothetical protein
LOC_Os04g06530OsAffx.25888.1.S1_x_at1/114+3394549..3395237hypothetical protein
LOC_Os04g06520Os.6075.1.S1_at11/114+3397874..3399582expressed protein
LOC_Os04g06520Os.6075.1.S2_at11/114+3397874..3399582expressed protein
LOC_Os04g06510OsAffx.25891.2.S1_at10/114+3404604..3406890hypothetical protein
LOC_Os04g06510Os.26930.1.S2_x_at1/114+3404604..3406890hypothetical protein
LOC_Os04g06500OsAffx.25892.1.S1_at11/114+3411608..3414314hypothetical protein
LOC_Os04g06500Os.26930.1.S2_x_at1/114+3411608..3414314hypothetical protein
LOC_Os04g06540OsAffx.13693.1.S1_at11/114+3424260..3425632hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25891.2.S1_at--642--2751NONE
AAGACAATGTGGAGCTGCGCAGCCT
NONE
OsAffx.25891.2.S1_at--26--5411Chr04:3406324..3406348 (25 bp)
GAAGCTACCGAGGATGCTCTTGCCA
LOC_Os04g06510
OsAffx.25891.2.S1_at--614--9951Chr04:3406329..3406353 (25 bp)
TACCGAGGATGCTCTTGCCAAAATA
LOC_Os04g06510
OsAffx.25891.2.S1_at--1026--5691Chr04:3406507..3406531 (25 bp)
GACTATACAACCGACCTTTACAGCA
LOC_Os04g06510
OsAffx.25891.2.S1_at--506--531Chr04:3406516..3406540 (25 bp)
ACCGACCTTTACAGCATTAGTATTG
LOC_Os04g06510
OsAffx.25891.2.S1_at--710--9111Chr04:3406574..3406598 (25 bp)
TGCTGCAATGGCTGCATCGTAATTA
LOC_Os04g06510
OsAffx.25891.2.S1_at--491--8331Chr04:3406583..3406607 (25 bp)
GGCTGCATCGTAATTACTGGGTTAA
LOC_Os04g06510
OsAffx.25891.2.S1_at--668--9292Chr04:3406611..3406635 (25 bp)
TCCCAAATCTGAATACTCGTACGAG
LOC_Os04g06510
OsAffx.25891.2.S1_at--613--5531Chr04:3406667..3406691 (25 bp)
GAAAAATCCTGAACGGGCGCTCGAT
LOC_Os04g06510
OsAffx.25891.2.S1_at--256--8971Chr04:3406676..3406700 (25 bp)
TGAACGGGCGCTCGATGTACGACTA
LOC_Os04g06510
OsAffx.25891.2.S1_at--813--9371Chr04:3406687..3406711 (25 bp)
TCGATGTACGACTACCCCGATAAAT
LOC_Os04g06510
Target Sequence 
AAGACAATGTGGAGCTGCGCAGCCTGTATGAAGCTACCGAGGATGCTCTTGCCAAAATATGGTCTAAGAAAGAATCTTCC
CGCTGCAGCTCCAGATCAAGACAAAAGTGTCTTGCTGACATCCTGCGATGCATGGAGAACAAAAGGAGAGAGAAAAGGCC
GGATAAATCCGACAACTGGAGGCTAGGCTACAGGACCCGGAACTGGCAACCAGACTATACAACCGACCTTTACAGCATTA
GTATTGTTCTGTCCGATGGGATTAAACTAGCTGATCATTTGCTGCAATGGCTGCATCGTAATTACTGGGTTAAATTTCCC
AAATCTGAATACTCGTACGAGGCAAAATTTGCACAGATGTTTCCGAAATTGAGAAAAATCCTGAACGGGCGCTCGATGTA
CGACTACCCCGATAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25891.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis