Browse Element(s) Details


Os.6075.1.S2_at

Description gb:CF319984
DB_XREF= gi:33691745
DB_XREF=HD--10-L02.g1
CLONE=HD--10-L02
TID=Os.6075.1
CNT=7
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.6075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-H07, full insert sequence
FL= gb:AK062765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0652011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06380Os.45721.1.S1_x_at1/114+3373225..3375804retrotransposon protein, putative, unclassified
LOC_Os04g06429NANA4+3377737..3379721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06480NANA4+3381963..3383171retrotransposon protein, putative, unclassified
LOC_Os04g06490OsAffx.25888.1.S1_x_at11/114+3391756..3392774hypothetical protein
LOC_Os04g06490OsAffx.25888.2.S1_x_at4/114+3391756..3392774hypothetical protein
LOC_Os04g06490Os.51348.1.S1_x_at2/114+3391756..3392774hypothetical protein
LOC_Os04g06530OsAffx.25888.2.S1_x_at11/114+3394549..3395237hypothetical protein
LOC_Os04g06530OsAffx.3727.1.S1_at2/114+3394549..3395237hypothetical protein
LOC_Os04g06530OsAffx.25888.1.S1_x_at1/114+3394549..3395237hypothetical protein
LOC_Os04g06520Os.6075.1.S1_at11/114+3397874..3399582expressed protein
LOC_Os04g06520Os.6075.1.S2_at11/114+3397874..3399582expressed protein
LOC_Os04g06510OsAffx.25891.2.S1_at10/114+3404604..3406890hypothetical protein
LOC_Os04g06510Os.26930.1.S2_x_at1/114+3404604..3406890hypothetical protein
LOC_Os04g06500OsAffx.25892.1.S1_at11/114+3411608..3414314hypothetical protein
LOC_Os04g06500Os.26930.1.S2_x_at1/114+3411608..3414314hypothetical protein
LOC_Os04g06540OsAffx.13693.1.S1_at11/114+3424260..3425632hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6075.1.S2_at--175--3571Chr04:3398271..3398295 (25 bp)
CATCAATTGAGTATCACGGCGTGGA
LOC_Os04g06520
Os.6075.1.S2_at--847--5231Chr04:3398231..3398255 (25 bp)
GAATCATATGCATCAGGAGGTACAC
LOC_Os04g06520
Os.6075.1.S2_at--968--7832Chr04:3398213..3398237 (25 bp)
GGTACACATGCATGAAGTCGTTCGC
LOC_Os04g06520
Os.6075.1.S2_at--795--1132Chr04:3398198..3398222 (25 bp)
AGTCGTTCGCAAGCTTAAGATATCG
LOC_Os04g06520
Os.6075.1.S2_at--840--7591Chr04:3398143..3398167 (25 bp)
GGGCATGGACAACTCCTGCAGCAGC
LOC_Os04g06520
Os.6075.1.S2_at--289--3851Chr04:3398128..3398152 (25 bp)
CTGCAGCAGCTTGGCCACGGAAGAA
LOC_Os04g06520
Os.6075.1.S2_at--737--272Chr04:3398069..3398093 (25 bp)
ATATGTGTGTGCTTTGTGGGTGCCA
LOC_Os04g06520
Os.6075.1.S2_at--554--7472Chr04:3398054..3398078 (25 bp)
GTGGGTGCCAACCTATTTTGGTGTA
LOC_Os04g06520
Os.6075.1.S2_at--407--212Chr04:3398023..3398047 (25 bp)
ATTTGCTTGTGTTTCTCGGTTGTGA
LOC_Os04g06520
Os.6075.1.S2_at--1032--7912Chr04:3398006..3398030 (25 bp)
GGTTGTGAGTTTTTTCTCTTCCATA
LOC_Os04g06520
Os.6075.1.S2_at--960--1972Chr04:3397922..3397946 (25 bp)
ACTGAATGTCTGAGCTGAGCCTGAA
LOC_Os04g06520
Target Sequence 
CATCAATTGAGTATCACGGCGTGGAGGTGCATCAGAAGATGAATCATATGCATCAGGAGGTACACATGCATGAAGTCGTT
CGCAAGCTTAAGATATCGGACAACGATCATGGAAACGCTAATGGGAGGGGGCATGGACAACTCCTGCAGCAGCTTGGCCA
CGGAAGAAATTGATCCGCTTATAAATATTACCAAAGCTAGATATATGTGTGTGCTTTGTGGGTGCCAACCTATTTTGGTG
TATGGTTTATTTGCTTGTGTTTCTCGGTTGTGAGTTTTTTCTCTTCCATAACATGTCTAATAATAAAACAATAACAAGAA
AGCTGCATTATTAGGAANNNNNNNNNNNNACTGAATGTCTGAGCTGAGCCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6075.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis