Browse Element(s) Details


OsAffx.25892.1.S1_at

Description tigr:9632.m00563
TID=OsAffx.25892.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0670011/11hypothetical protein
LOC_Os04g0650011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06650NANA4+3490416..3492347retrotransposon protein, putative, unclassified
LOC_Os04g06660NANA4+3492858..3494207retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06670Os.40360.1.S1_x_at1/114+3497609..3500557hypothetical protein
LOC_Os04g06690Os.14491.2.S1_x_at3/114+3505357..3510057transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06690Os.47463.1.S1_x_at1/114+3505357..3510057transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06700OsAffx.25892.1.S1_at11/114+3517058..3519367hypothetical protein
LOC_Os04g06700Os.26930.1.S2_x_at1/114+3517058..3519367hypothetical protein
LOC_Os04g06710OsAffx.3735.1.S1_at11/114+3524700..3525035hypothetical protein
LOC_Os04g06734OsAffx.13696.1.S1_at11/114+3526847..3535106expressed protein
LOC_Os04g06734OsAffx.25894.1.S1_x_at1/114+3526847..3535106expressed protein
LOC_Os04g06760OsAffx.25894.1.S1_at11/114+3538469..3538756hypothetical protein
LOC_Os04g06760OsAffx.25894.1.S1_x_at11/114+3538469..3538756hypothetical protein
LOC_Os04g06770Os.10217.1.S1_a_at11/114+3542493..3550045Piwi domain containing protein, expressed
LOC_Os04g06770Os.11110.1.S1_at1/114+3542493..3550045Piwi domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25892.1.S1_at--1110--5992Chr04:3517575..3517599 (25 bp)
GAGAGAAGTGTCTTGCCAAAAGTCT
LOC_Os04g06700
OsAffx.25892.1.S1_at--273--1112Chr04:3517569..3517593 (25 bp)
AGTGTCTTGCCAAAAGTCTGCTTGA
LOC_Os04g06700
OsAffx.25892.1.S1_at--697--2192Chr04:3517485..3517509 (25 bp)
ACAAAACTGAGATACTGTCACCAGG
LOC_Os04g06700
OsAffx.25892.1.S1_at--91--9772Chr04:3517452..3517476 (25 bp)
TAAGTGTTCTTTACGACTCGAGTTA
LOC_Os04g06700
OsAffx.25892.1.S1_at--613--10332Chr04:3517443..3517467 (25 bp)
TTTACGACTCGAGTTATATTCTATC
LOC_Os04g06700
OsAffx.25892.1.S1_at--414--1412Chr04:3517340..3517364 (25 bp)
AGACAAACTTAAGCGGCAGTTTCCG
LOC_Os04g06700
OsAffx.25892.1.S1_at--515--5732Chr04:3517292..3517316 (25 bp)
GACTGAGACTGAATTAGAGTATCAA
LOC_Os04g06700
OsAffx.25892.1.S1_at--738--10032Chr04:3517278..3517302 (25 bp)
TAGAGTATCAAATGCCCAAGGAAGT
LOC_Os04g06700
OsAffx.25892.1.S1_at--1152--9592Chr04:3517245..3517269 (25 bp)
TCATCTTCAGAGAGTGGGTGCGTCT
LOC_Os04g06700
OsAffx.25892.1.S1_at--369--2172Chr04:3517124..3517148 (25 bp)
ACACGCTCGCATTCTTCGTGTGAAA
LOC_Os04g06700
OsAffx.25892.1.S1_at--527--6192Chr04:3517088..3517112 (25 bp)
GAGGAAACCAGCAGATAGCTACGAT
LOC_Os04g06700
Target Sequence 
GAGAGAAGTGTCTTGCCAAAAGTCTGCTTGANAAGGAGATGAAGAAGAATGGAANGACACCCATGAGAACATTCAAGTGG
NATCAAGGNAACAAAACTGAGATACTGTCACCAGGNGCCTATCTAAGTGTTCTTTACGACTCGAGTTATATTCTATCTGA
NGGAGCTAGACTAGCCNATCTTCTGCTAAANTGGAAACCTGGTTCTAANATCGANATTGGAGANAANNNAGTACTNGAAG
ACAAACTTAAGCGGCAGTTTCCGGATTTGATGAAATCCGGTGAGGNGACTGAGACTGAATTAGAGTATCAAATGCCCAAG
GAAGTGANNGACATCATCTTCAGAGAGTGGGTGCGTCTCNTNATTAACGTGTCCATCAGATGTACNAGGAATTCCCATGC
CAAGCAGCTTGCTCGTGGTGGTGAGCTCACNACCGTTGTGTGGATCCTCGNTGAACACGCTCGCATTCTTCGTGTGAAAA
AGACGACNAAGAGGAAACCAGCAGATAGCTACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis