Browse Element(s) Details


OsAffx.13696.1.S1_at

Description tigr:9632.m00588
TID=OsAffx.13696.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0673411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06690Os.14491.2.S1_x_at3/114+3505357..3510057transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06690Os.47463.1.S1_x_at1/114+3505357..3510057transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06700OsAffx.25892.1.S1_at11/114+3517058..3519367hypothetical protein
LOC_Os04g06700Os.26930.1.S2_x_at1/114+3517058..3519367hypothetical protein
LOC_Os04g06710OsAffx.3735.1.S1_at11/114+3524700..3525035hypothetical protein
LOC_Os04g06734OsAffx.13696.1.S1_at11/114+3526847..3535106expressed protein
LOC_Os04g06734OsAffx.25894.1.S1_x_at1/114+3526847..3535106expressed protein
LOC_Os04g06760OsAffx.25894.1.S1_at11/114+3538469..3538756hypothetical protein
LOC_Os04g06760OsAffx.25894.1.S1_x_at11/114+3538469..3538756hypothetical protein
LOC_Os04g06770Os.10217.1.S1_a_at11/114+3542493..3550045Piwi domain containing protein, expressed
LOC_Os04g06770Os.11110.1.S1_at1/114+3542493..3550045Piwi domain containing protein, expressed
LOC_Os04g06780OsAffx.25895.1.S1_at11/114+3552567..3552887hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13696.1.S1_at--387--9572Chr04:3534720..3534744 (25 bp)
TCTTCTTCGTCAGGAAAATCGTTAA
LOC_Os04g06734
OsAffx.13696.1.S1_at--661--3051Chr04:3534736..3534760 (25 bp)
AATCGTTAACAAACAATGCTGCTGA
LOC_Os04g06734
OsAffx.13696.1.S1_at--756--2211Chr04:3534748..3534772 (25 bp)
ACAATGCTGCTGAAAACATAATGGA
LOC_Os04g06734
OsAffx.13696.1.S1_at--297--2511Chr04:3534762..3534786 (25 bp)
AACATAATGGAAGGCATCAACAAAC
LOC_Os04g06734
OsAffx.13696.1.S1_at--993--371Chr04:3534777..3534801 (25 bp)
ATCAACAAACAAATCCTTGGAGCTG
LOC_Os04g06734
OsAffx.13696.1.S1_at--1050--8231Chr04:3534835..3534859 (25 bp)
GGCAAAACAAAGAGCTGTCGAAGCA
LOC_Os04g06734
OsAffx.13696.1.S1_at--384--3291Chr04:3534884..3534908 (25 bp)
CAAAGAGCTGATGGAGCTGCCTGCT
LOC_Os04g06734
OsAffx.13696.1.S1_at--814--831Chr04:3534894..3534918 (25 bp)
ATGGAGCTGCCTGCTCTTCGAAAAA
LOC_Os04g06734
OsAffx.13696.1.S1_at--285--2371Chr04:3534965..3534989 (25 bp)
AAACGAAGATCTGGCCAAGCTCAGG
LOC_Os04g06734
OsAffx.13696.1.S1_at--81--2811Chr04:3534970..3534994 (25 bp)
AAGATCTGGCCAAGCTCAGGAAGGA
LOC_Os04g06734
OsAffx.13696.1.S1_at--874--7591Chr04:3535045..3535069 (25 bp)
GGGAGATACGACAACTTAAGGAGGA
LOC_Os04g06734
Target Sequence 
TCTTCTTCGTCAGGAAAATCGTTAACAAACAATGCTGCTGAAAACATAATGGAAGGCATCAACAAACAAATCCTTGGAGC
TGAGCAGTACAAGATGGAGAATAGAGATCTTAAGAGGCAAAACAAAGAGCTGTCGAAGCAAAACAAGGAGCTGATGGAGC
AGAGCAAAGAGCTGATGGAGCTGCCTGCTCTTCGAAAAAAGCACGAAGAACTGACCAAGAGGTATGAGAGCCTGACTAAG
AAGCGAAACGAAGATCTGGCCAAGCTCAGGAAGGAGAAGGAAGATCAGCAGGTCGATTTCAAGAAAGAGAAAGAAGATCT
GGAGAGGGAGATACGACAACTTAAGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis