Browse Element(s) Details


Os.10217.1.S1_a_at

Description gb:AK065274.1
DB_XREF= gi:32975292
TID=Os.10217.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10217 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-304-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002L10, full insert sequence.
FL= gb:AK065274.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0677011/11Piwi domain containing protein, expressed
LOC_Os01g364001/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06700OsAffx.25892.1.S1_at11/114+3517058..3519367hypothetical protein
LOC_Os04g06700Os.26930.1.S2_x_at1/114+3517058..3519367hypothetical protein
LOC_Os04g06710OsAffx.3735.1.S1_at11/114+3524700..3525035hypothetical protein
LOC_Os04g06734OsAffx.13696.1.S1_at11/114+3526847..3535106expressed protein
LOC_Os04g06734OsAffx.25894.1.S1_x_at1/114+3526847..3535106expressed protein
LOC_Os04g06760OsAffx.25894.1.S1_at11/114+3538469..3538756hypothetical protein
LOC_Os04g06760OsAffx.25894.1.S1_x_at11/114+3538469..3538756hypothetical protein
LOC_Os04g06770Os.10217.1.S1_a_at11/114+3542493..3550045Piwi domain containing protein, expressed
LOC_Os04g06770Os.11110.1.S1_at1/114+3542493..3550045Piwi domain containing protein, expressed
LOC_Os04g06780OsAffx.25895.1.S1_at11/114+3552567..3552887hypothetical protein
LOC_Os04g06790Os.12753.1.S1_at11/114+3562528..3568697expressed protein
LOC_Os04g06800OsAffx.25896.1.S1_at10/114+3569226..3570346hypothetical protein
LOC_Os04g06810OsAffx.13697.1.S1_at11/114+3573461..3575807expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006342biological_processchromatin silencing
GO:0035195biological_processmiRNA-mediated gene silencing
GO:0040034biological_processregulation of development, heterochronic
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10217.1.S1_a_at--1013--4051Chr04:3543290..3543314 (25 bp)
CGATGAGATAGGTTTCTCCCCTGAT
LOC_Os04g06770
Os.10217.1.S1_a_at--540--8851Chr04:3543266..3543290 (25 bp)
TGATCTGCAGGAGCTAGTGCACTCA
LOC_Os04g06770
Os.10217.1.S1_a_at--243--1131Chr04:3543251..3543275 (25 bp)
AGTGCACTCACTCTCTTATGTGTAT
LOC_Os04g06770
Os.10217.1.S1_a_at--177--1251Chr04:3543023..3543043 (21 bp)
AGTTGTTGCTCCGATTTGCTATGCC
LOC_Os04g06770
Os.10217.1.S1_a_at--186--8251Chr04:3542977..3543001 (25 bp)
GGCACATTCCTCAAGTTCGAAGATA
LOC_Os04g06770
Os.10217.1.S1_a_at--763--4652Chr04:3542944..3542968 (25 bp)
GCGTCGTCCAGCCAAGGAGGTCATA
LOC_Os04g06770
Os.10217.1.S1_a_at--603--7131Chr04:3542925..3542949 (25 bp)
GTCATACGTCTGTCGGAAGTGTACC
LOC_Os04g06770
Os.10217.1.S1_a_at--289--2531Chr04:3542781..3542805 (25 bp)
AACTACTAGTACTTTTGCTTCTCAT
LOC_Os04g06770
Os.10217.1.S1_a_at--362--8751Chr04:3542745..3542769 (25 bp)
TGTATGGAACCTATGTACCTGCCCT
LOC_Os04g06770
Os.10217.1.S1_a_at--775--7331Chr04:3542583..3542607 (25 bp)
GTGCAGCTATGCCTATTGCTGGTTA
LOC_Os04g06770
Os.10217.1.S1_a_at--762--3691Chr04:3542544..3542568 (25 bp)
CTATGTAGCATGTGCCGTTTCCCTT
LOC_Os04g06770
Target Sequence 
CGATGAGATAGGTTTCTCCCCTGATGATCTGCAGGAGCTAGTGCACTCACTCTCTTATGTGTATCAGAGAAGCACNACAG
CCATATCAGTTGTTGCTCCGATTTGCTATGCCCATCTTGCTGCTGCTCAGGTGGGCACATTCCTCAAGTTCGAAGATATG
TCGGACGCGTCGTCCAGCCAAGGAGGTCATACGTCTGTCGGAAGTGTACCGGTGNCCTGAGCTGCCTCGCCTCCATGAGA
AAGTGAGGAGCTCCATGTTTTTCTGCTGATCNGTGCNNCCTCTCGATCAAATGCTCGCCGACNGTTGAGAAANTCCNNGG
TGATCGGCCTGGGGGAACTACTAGTACTTTTGCTTCTCATAATTAGGAACATGTATGGAACCTATGTACCTGCCCTTGGC
ATGCTGCCTGTGNCATGGATTATCTGCTGGTAGGAGTATCCTTTAACCAAACCCTTTTAGCTTTTAAGTTAGGTTTAATG
GACTGCTGTTTAGTATGTGGTGTGGTGTTAGTAAGTTTCCAGACTTCGACANTTGTGCAGCTATGCCTATTGCTGGTTAT
GGNCCCTTCCCTTCTATGTAGCATGTGCCGTTTCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10217.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis