Browse Element(s) Details


OsAffx.25896.1.S1_at

Description tigr:9632.m00593
TID=OsAffx.25896.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0680010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06770Os.10217.1.S1_a_at11/114+3542493..3550045Piwi domain containing protein, expressed
LOC_Os04g06770Os.11110.1.S1_at1/114+3542493..3550045Piwi domain containing protein, expressed
LOC_Os04g06780OsAffx.25895.1.S1_at11/114+3552567..3552887hypothetical protein
LOC_Os04g06790Os.12753.1.S1_at11/114+3562528..3568697expressed protein
LOC_Os04g06800OsAffx.25896.1.S1_at10/114+3569226..3570346hypothetical protein
LOC_Os04g06810OsAffx.13697.1.S1_at11/114+3573461..3575807expressed protein
LOC_Os04g06820NANA4+3580369..3584284retrotransposon protein, putative, unclassified
LOC_Os04g06830OsAffx.25897.1.S1_at11/114+3586491..3587292hypothetical protein
LOC_Os04g06840OsAffx.25898.1.S1_at11/114+3594503..3595747hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25896.1.S1_at--305--711Chr04:3570245..3570269 (25 bp)
ATGATGGCCCATCGATTCTCAGAAT
LOC_Os04g06800
OsAffx.25896.1.S1_at--538--8411Chr04:3570202..3570226 (25 bp)
GGCCGATGGTTTGCAGGCGTTCCCA
LOC_Os04g06800
OsAffx.25896.1.S1_at--263--1791NONE
ACCCAACCCAGGTCTATTGAGTAGG
NONE
OsAffx.25896.1.S1_at--274--1191Chr04:3569450..3569474 (25 bp)
AGTAGGACCCTTGGCCATGACGAGA
LOC_Os04g06800
OsAffx.25896.1.S1_at--1052--671Chr04:3569434..3569458 (25 bp)
ATGACGAGACTCACCAGGGCCTGCT
LOC_Os04g06800
OsAffx.25896.1.S1_at--601--9671Chr04:3569395..3569419 (25 bp)
TCACCGATCTAGTCATCCACATATC
LOC_Os04g06800
OsAffx.25896.1.S1_at--214--2091Chr04:3569377..3569401 (25 bp)
ACATATCCCCTCTCGGGATCTGGAG
LOC_Os04g06800
OsAffx.25896.1.S1_at--473--3771Chr04:3569368..3569392 (25 bp)
CTCTCGGGATCTGGAGGCTACCGTC
LOC_Os04g06800
OsAffx.25896.1.S1_at--613--371Chr04:3569343..3569367 (25 bp)
ATCACCGACCCATGTTGGACGCAAT
LOC_Os04g06800
OsAffx.25896.1.S1_at--469--731Chr04:3569332..3569356 (25 bp)
ATGTTGGACGCAATCTCTGCTCTGC
LOC_Os04g06800
OsAffx.25896.1.S1_at--489--10611Chr04:3569275..3569299 (25 bp)
TTCGTCACCTGAGCCGACTGTGCGA
LOC_Os04g06800
Target Sequence 
ATGATGGCCCATCGATTCTCAGAATCATCGCCGCGGACTGGTCGGCCGATGGTTTGCAGGCGTTCCCACCCAACCCAGGT
CTATTGAGTAGGACCCTTGGCCATGACGAGACTCACCAGGGCCTGCTCGTCCCTGACCTTCTCACCGATCTAGTCATCCA
CATATCCCCTCTCGGGATCTGGAGGCTACCGTCATCACCGACCCATGTTGGACGCAATCTCTGCTCTGCCGTCCACACCT
CCAAGTCACCGCCAACTTCTCTTCGTCACCTGAGCCGACTGTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis