Browse Element(s) Details


OsAffx.25897.1.S1_at

Description tigr:9632.m00596
TID=OsAffx.25897.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0683011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06790Os.12753.1.S1_at11/114+3562528..3568697expressed protein
LOC_Os04g06800OsAffx.25896.1.S1_at10/114+3569226..3570346hypothetical protein
LOC_Os04g06810OsAffx.13697.1.S1_at11/114+3573461..3575807expressed protein
LOC_Os04g06820NANA4+3580369..3584284retrotransposon protein, putative, unclassified
LOC_Os04g06830OsAffx.25897.1.S1_at11/114+3586491..3587292hypothetical protein
LOC_Os04g06840OsAffx.25898.1.S1_at11/114+3594503..3595747hypothetical protein
LOC_Os04g06850Os.54172.1.S1_at9/114+3596188..3600794expressed protein
LOC_Os04g06860OsAffx.16234.2.S1_x_at7/114+3604492..3605117Cationic peroxidase 2 precursor, putative
LOC_Os04g06870OsAffx.25036.1.S1_at6/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870OsAffx.25036.2.S1_at4/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870OsAffx.26548.1.S1_at3/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870Os.39298.1.S1_at1/114+3608911..3614057retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25897.1.S1_at--717--7091Chr04:3586680..3586704 (25 bp)
GTCACAGAGGGTTGAATGCCTTGAA
LOC_Os04g06830
OsAffx.25897.1.S1_at--274--5574Chr08:10829742..10829766 (25 bp)
GAAAGATCAGACCATTTCTCTCCTT
NONE
OsAffx.25897.1.S1_at--108--1394Chr08:10829750..10829774 (25 bp)
AGACCATTTCTCTCCTTCCAGATGT
NONE
OsAffx.25897.1.S1_at--341--10692Chr08:10829765..10829788 (24 bp)
TTCCAGATGTTCCAAGACGCCAGAC
NONE
OsAffx.25897.1.S1_at--251--5811Chr04:3586740..3586764 (25 bp)
GACGCCAGACGAAACAGTTCCATGA
LOC_Os04g06830
OsAffx.25897.1.S1_at--1101--5551Chr04:3586778..3587057 (25 bp)
GAAAGAGGAGCGCTGGATCCATTTA
LOC_Os04g06830
OsAffx.25897.1.S1_at--647--4572Chr04:3586787..3587066 (25 bp)
GCGCTGGATCCATTTAAAGGTCACA
LOC_Os04g06830
OsAffx.25897.1.S1_at--322--10411Chr04:3587074..3587098 (25 bp)
TTATAGACCAGAACGAGAGCTTGTA
LOC_Os04g06830
OsAffx.25897.1.S1_at--214--10193Chr05:12704241..12704265 (25 bp)
TATACTCTTGGTAAGCTTGTTGAGA
NONE
OsAffx.25897.1.S1_at--411--5894Chr08:10830641..10830665 (25 bp)
GAGCGGCAGGTGAAATTGATCTTGT
NONE
OsAffx.25897.1.S1_at--134--10793Chr08:10830656..10830680 (25 bp)
TTGATCTTGTGGTTCTCTTGCTAGA
NONE
Target Sequence 
GTCACAGAGGGTTGAATGCCTTGAAAGATCAGACCATTTCTCTCCTTCCAGATGTTCCAAGACGCCAGACGAAACAGTTC
CATGAAACATTGTTGGGAGAAAGAGGAGCGCTGGATCCATTTAAAGGTCACAGGGGGAGTTATAGACCAGAACGAGAGCT
TGTAAAATCTCTTAGAGATTATACTCTTGGTAAGCTTGTTGAGAGAGCGGCAGGTGAAATTGATCTTGTGGTTCTCTTGC
TAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis