Browse Element(s) Details


Os.54172.1.S1_at

Description gb:AK102300.1
DB_XREF= gi:32987509
TID=Os.54172.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089N09, full insert sequence.
FL= gb:AK102300.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g068509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06810OsAffx.13697.1.S1_at11/114+3573461..3575807expressed protein
LOC_Os04g06820NANA4+3580369..3584284retrotransposon protein, putative, unclassified
LOC_Os04g06830OsAffx.25897.1.S1_at11/114+3586491..3587292hypothetical protein
LOC_Os04g06840OsAffx.25898.1.S1_at11/114+3594503..3595747hypothetical protein
LOC_Os04g06850Os.54172.1.S1_at9/114+3596188..3600794expressed protein
LOC_Os04g06860OsAffx.16234.2.S1_x_at7/114+3604492..3605117Cationic peroxidase 2 precursor, putative
LOC_Os04g06870OsAffx.25036.1.S1_at6/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870OsAffx.25036.2.S1_at4/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870OsAffx.26548.1.S1_at3/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06870Os.39298.1.S1_at1/114+3608911..3614057retrotransposon protein, putative, unclassified
LOC_Os04g06879NANA4+3615929..3616475hypothetical protein
LOC_Os04g06890OsAffx.25899.1.S1_at11/114+3618375..3619295hypothetical protein
LOC_Os04g06900OsAffx.13699.1.S1_at11/114+3622315..3625192expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54172.1.S1_at--655--7791Chr04:3596731..3596755 (25 bp)
GGTCCAAATCTCAAACGCTCCAAAG
LOC_Os04g06850
Os.54172.1.S1_at--229--2251Chr04:3596607..3596631 (25 bp)
AAATTCGCCGAGGTGCTGCTAAGTA
LOC_Os04g06850
Os.54172.1.S1_at--635--6511NONE
GATATCTCGGTAATGCTGGACTATA
NONE
Os.54172.1.S1_at--423--10211Chr04:3596431..3596455 (25 bp)
TATTCTGATGTATGCGTCCGTCCGA
LOC_Os04g06850
Os.54172.1.S1_at--999--7171Chr04:3596349..3596373 (25 bp)
GTCTGGATACTCAACGAACACGCTG
LOC_Os04g06850
Os.54172.1.S1_at--1107--5491Chr04:3596334..3596358 (25 bp)
GAACACGCTGGCATATTTCGCATCC
LOC_Os04g06850
Os.54172.1.S1_at--442--551Chr04:3596313..3596337 (25 bp)
ATCCCCGGTGATGCCAGAGATGAAA
LOC_Os04g06850
Os.54172.1.S1_at--175--5551NONE
GAAACTGGCGAGCTTGGAACCTAAT
NONE
Os.54172.1.S1_at--856--591Chr04:3596269..3596293 (25 bp)
ATGCCTAGTAACACAGCCTATCGTT
LOC_Os04g06850
Os.54172.1.S1_at--396--4451Chr04:3596254..3596278 (25 bp)
GCCTATCGTTAACCCGTGTGTTACA
LOC_Os04g06850
Os.54172.1.S1_at--57--7431Chr04:3596237..3596261 (25 bp)
GTGTTACACGGCCTATTGTTTGTTA
LOC_Os04g06850
Target Sequence 
GGTCCAAATCTCAAACGCTCCAAAGAAGGTAAGCAACTGGAGGCCAGGTTATAGTAATCACAAGTCAAGGCCAGCAAAGG
CAAGTGTTCTTTATGACGAGAATATAATTCTGTCTGATGGAGCTAAATTCGCCGAGGTGCTGCTAAGTAGAGCTTGGGTA
GACAGCCCACATATAACCGCACATATCGAAATTAGCCCTGAGAGATATGAAAGGATTAAAGAGATGATTCCTAAATTGGA
AGAACAGGTTGCGTTTGATATCTCGGTAATGCTGGACTATATCTTCAAGGCATGGGTTCGTATTCTGATGTATGCGTCCG
TCCGATGCACAAGGGATTCTCATGCCAAGCAGCTCGCCTGTGGAGGCGAGCTCACAACAATTGTCTGGATACTCAACGAA
CACGCTGGCATATTTCGCATCCCCGGTGATGCCAGAGATGAAACTGGCGAGCTTGGAACCTAATGCCTAGTAACACAGCC
TATCGTTAACCCGTGTGTTACACGGCCTATTGTTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis