Browse Element(s) Details


Os.39298.1.S1_at

Description gb:CF295022
DB_XREF= gi:33664055
DB_XREF=30DGS--04-M10.b1
CLONE=30DGS--04-M10
TID=Os.39298.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39298 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180917.1 (A.thaliana) putative cinnamoyl-CoA reductase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g315069/11cinnamoyl-CoA reductase, putative, expressed
LOC_Os04g068701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31486Os.25736.1.S1_at11/119+18986949..18990156Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os09g31490Os.15746.1.S1_at11/119+18993543..18997420NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31490OsAffx.15007.1.S1_at1/119+18993543..18997420NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31494NANA9+19000542..19001099hypothetical protein
LOC_Os09g31498Os.15746.1.S1_at3/119+19002002..19004014NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.48879.1.S1_x_at11/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.48879.1.S1_at11/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.51220.1.S1_x_at11/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.51220.1.S1_at8/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31506Os.39298.1.S1_at9/119+19014610..19015664cinnamoyl-CoA reductase, putative, expressed
LOC_Os09g31506Os.17520.1.S1_at1/119+19014610..19015664cinnamoyl-CoA reductase, putative, expressed
LOC_Os09g31510OsAffx.28370.1.S1_x_at4/119+19016021..19017668NAD dependent epimerase/dehydratase family protein
LOC_Os09g31510OsAffx.28370.1.S1_at2/119+19016021..19017668NAD dependent epimerase/dehydratase family protein
LOC_Os09g31514Os.17520.1.S1_at11/119+19019432..19023327NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31518NANA9+19027679..19030331hypothetical protein
LOC_Os09g31522NANA9+19032498..19033092Dihydroflavonol-4-reductase, putative
LOC_Os09g31930Os.54726.1.S1_at11/119+19039335..19042165retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39298.1.S1_at--779--2971Chr09:19015616..19015640 (25 bp)
AATGGTCTGCATGTTGTTACGGTTT
LOC_Os09g31506
Os.39298.1.S1_at--89--10011Chr09:19015603..19015627 (25 bp)
TTGTTACGGTTTGCCCTGGAATTGT
LOC_Os09g31506
Os.39298.1.S1_at--384--1371Chr09:19015561..19015585 (25 bp)
AGACTGTGCAACTCAACACTACCAC
LOC_Os09g31506
Os.39298.1.S1_at--1104--9492Chr09:19015416..19015554 (25 bp)
TCTCCTCTATATCATCCAAGTGCAG
LOC_Os09g31506
Os.39298.1.S1_at--129--6231Chr09:19015391..19015415 (25 bp)
GAGGCCATGGCCCTGATACAATGAA
LOC_Os09g31506
Os.39298.1.S1_at--365--2251Chr09:19015362..19015386 (25 bp)
AAATTCTTGTCCATGGTGGATGTCC
LOC_Os09g31506
Os.39298.1.S1_at--751--8871Chr09:19015336..19015360 (25 bp)
TGATGTCGCTGATGCTCTACTTCTG
LOC_Os09g31506
Os.39298.1.S1_at--404--8911Chr09:19015289..19015313 (25 bp)
TGAGCGATACATCTGCGCACTAGAA
LOC_Os09g31506
Os.39298.1.S1_at--1026--731NONE
ATGTACCCTAACTCCAATTATGTAG
NONE
Os.39298.1.S1_at--641--271NONE
ATATGGCTGCGTCAACATCAACCTA
NONE
Os.39298.1.S1_at--455--10791Chr09:19015099..19015123 (25 bp)
TTGTACTGGTGTTTTCTACTGCAAA
LOC_Os09g31506
Target Sequence 
AATGGTCTGCATGTTGTTACGGTTTGCCCTGGAATTGTTTTTGGCCCAATGTTGCAGACTGTGCAACTCAACACTACCAC
CAAAGCTCTCCTCTATATCATCCAAGTGCAGGAGGCCATGGCCCTGATACAATGAACAACAAATTCTTGTCCATGGTGGA
TGTCCGTGATGTCGCTGATGCTCTACTTCTGCATATGAAGAGGTAGGGCCATCTGAGCGATACATCTGCGCACTAGAACA
AATGGACCTGAANGATTTGTTGAGTTTGATGAAGANCATGTACCCTAACTCCAATTATGTAGACAAGTAAGTCATTATCT
AAAGAAAATGTACAAAAGTAGGTGCAATATTCCTATATATGGCTGCGTCAACATCAACCTATTATTCCAGAGCTTATCTT
AATTTGTACTGGTGTTTTCTACTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis