Browse Element(s) Details


Os.17520.1.S1_at

Description gb:AK062287.1
DB_XREF= gi:32972305
TID=Os.17520.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-E03, full insert sequence.
FL= gb:AK062287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3151411/11NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g315061/11cinnamoyl-CoA reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31490Os.15746.1.S1_at11/119+18993543..18997420NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31490OsAffx.15007.1.S1_at1/119+18993543..18997420NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31494NANA9+19000542..19001099hypothetical protein
LOC_Os09g31498Os.15746.1.S1_at3/119+19002002..19004014NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.48879.1.S1_x_at11/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.48879.1.S1_at11/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.51220.1.S1_x_at11/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31502Os.51220.1.S1_at8/119+19010720..19013394NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31506Os.39298.1.S1_at9/119+19014610..19015664cinnamoyl-CoA reductase, putative, expressed
LOC_Os09g31506Os.17520.1.S1_at1/119+19014610..19015664cinnamoyl-CoA reductase, putative, expressed
LOC_Os09g31510OsAffx.28370.1.S1_x_at4/119+19016021..19017668NAD dependent epimerase/dehydratase family protein
LOC_Os09g31510OsAffx.28370.1.S1_at2/119+19016021..19017668NAD dependent epimerase/dehydratase family protein
LOC_Os09g31514Os.17520.1.S1_at11/119+19019432..19023327NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31518NANA9+19027679..19030331hypothetical protein
LOC_Os09g31522NANA9+19032498..19033092Dihydroflavonol-4-reductase, putative
LOC_Os09g31930Os.54726.1.S1_at11/119+19039335..19042165retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g31940Os.54726.1.S1_at11/119+19045871..19047659transposon protein, putative, unclassified
LOC_Os09g31940Os.52004.1.S1_at2/119+19045871..19047659transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17520.1.S1_at--495--5131Chr09:19020730..19020754 (25 bp)
GCAAAGTGCTCCTCTATATGATTAA
LOC_Os09g31514
Os.17520.1.S1_at--966--9451Chr09:19020072..19020096 (25 bp)
TCTGGCCCATGGTAGATGTCCGTGA
LOC_Os09g31514
Os.17520.1.S1_at--1149--4871Chr09:19020037..19020061 (25 bp)
GCTTTACTTCTAGCATACCACAAGG
LOC_Os09g31514
Os.17520.1.S1_at--668--1631Chr09:19020000..19020024 (25 bp)
AGCGGTACTTATGCACTCTAGAACA
LOC_Os09g31514
Os.17520.1.S1_at--311--2371Chr09:19019696..19019720 (25 bp)
AAACGGGAGGAGACACTTGCGGACA
LOC_Os09g31514
Os.17520.1.S1_at--54--2072Chr09:19019682..19019706 (25 bp)
ACTTGCGGACAGCATCGAGTTCTTT
LOC_Os09g31514
Os.17520.1.S1_at--15--931Chr09:19019653..19019677 (25 bp)
AGGCAGGCCTTCTAGATGGGCGACC
LOC_Os09g31514
Os.17520.1.S1_at--883--9311Chr09:19019619..19019643 (25 bp)
TCCCTATTTCGCTGTCCAGGAATGA
LOC_Os09g31514
Os.17520.1.S1_at--693--1971Chr09:19019594..19019618 (25 bp)
ACTGAAGATGGCCTTGGTCCCAATT
LOC_Os09g31514
Os.17520.1.S1_at--726--111Chr09:19019572..19019596 (25 bp)
ATTCTCAGCTAATTAATCTTCCCCA
LOC_Os09g31514
Os.17520.1.S1_at--98--6231Chr09:19019474..19019498 (25 bp)
GAGGCCGGTATCATGTATACTTACA
LOC_Os09g31514
Target Sequence 
GCAAAGTGCTCCTCTATATGATTAAGGGAGGAGNNNNNCCNCACGTTATGNACAACAAATTCTGGCCCATGGTAGATGTC
CGTGATGTTGCTGATGCTTTACTTCTAGCATACCACAAGGCAGGNCCATCTGAGCGGTACTTATGCACTCTAGAACAGAT
GGACCTGAAACANTTTATTGGATCTGATGAAGAACATGTACCCTAACTACANATTATGCAGACANAGATGGTTGATGTGG
ATTACANAGGTCGAAGTGACATCAGAGAAACTGAAGAATCTGGGCTGGAACCCAAGGAAACGGGAGGAGACACTTGCGGA
CAGCATCGAGTTCTTTGAGAAGGCAGGCCTTCTAGATGGGCGACCTTGCCGGCTTCCCTATTTCGCTGTCCAGGAATGAA
CTGAAGATGGCCTTGGTCCCAATTCTCAGCTAATTAATCTTCCCCATTTACTAGTATGGATGCACCTTGTAAAAAAAGTT
AATGCATGTTTTTTTTATGTATCTTGTACTGATACTTAGGAGGCCGGTATCATGTATACTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17520.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis