Browse Element(s) Details


Os.52004.1.S1_at

Description gb:AK064520.1
DB_XREF= gi:32974538
TID=Os.52004.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52004 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-F11, full insert sequence.
FL= gb:AK064520.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g178303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g319402/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g17790Os.47999.3.S1_x_at1/115+10204347..10206657retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17800OsAffx.4364.1.S1_at10/115+10212685..10213940SHR5-receptor-like kinase, putative
LOC_Os05g17810OsAffx.26937.4.S1_x_at10/115+10219524..10225829SHR5-receptor-like kinase, putative
LOC_Os05g17810Os.27420.2.A1_s_at8/115+10219524..10225829SHR5-receptor-like kinase, putative
LOC_Os05g17810OsAffx.26937.1.S1_x_at3/115+10219524..10225829SHR5-receptor-like kinase, putative
LOC_Os05g17810Os.53303.1.S1_at1/115+10219524..10225829SHR5-receptor-like kinase, putative
LOC_Os05g17820NANA5+10229111..10229803retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17830Os.54726.1.S1_at9/115+10231258..10237448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17830Os.52004.1.S1_at3/115+10231258..10237448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17830OsAffx.21264.1.S1_x_at2/115+10231258..10237448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17840Os.10731.1.A1_a_at11/115+10240730..10245535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17840Os.45173.1.S1_x_at3/115+10240730..10245535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17849Os.33107.1.S1_at4/115+10247555..10248089NA
LOC_Os05g17860NANA5+10251528..10251902retrotransposon protein, putative, unclassified
LOC_Os05g17870OsAffx.1647.1.S1_at1/115+10252827..10255517retrotransposon protein, putative, unclassified
LOC_Os05g17880NANA5+10258905..10260405hypothetical protein
LOC_Os05g17890OsAffx.940.1.S1_x_at1/115+10262422..10266618transposon protein, putative, unclassified
LOC_Os05g17890OsAffx.22896.1.S1_x_at1/115+10262422..10266618transposon protein, putative, unclassified
LOC_Os05g17890OsAffx.28610.2.S1_x_at1/115+10262422..10266618transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52004.1.S1_at--9--4672Chr05:10238509..10238533 (25 bp)
GCGTGTCGTCAGGTTGCACTAATTA
NONE
Os.52004.1.S1_at--732--4915Chr09:19045906..19045930 (25 bp)
GCTTGCAGCAAGTTATCGGTCGTTC
LOC_Os09g31940
Os.52004.1.S1_at--761--9435Chr09:19045891..19045915 (25 bp)
TCGGTCGTTCTTCGGCTAGTTATCA
LOC_Os09g31940
Os.52004.1.S1_at--311--373Chr09:19045817..19045841 (25 bp)
ATCAGAGCCTCGGTTGCAACGGTAG
NONE
Os.52004.1.S1_at--942--7933Chr09:19045793..19045817 (25 bp)
GGATTTTTACCCTTAGCTACATATA
NONE
Os.52004.1.S1_at--884--10833Chr09:19045765..19045789 (25 bp)
TTGTGTTCGTCCTATCCACTGAAAA
NONE
Os.52004.1.S1_at--305--9493Chr09:19045726..19045750 (25 bp)
TCTGCTATAGCCCTTTGTTTCAATC
NONE
Os.52004.1.S1_at--924--1232Chr09:19045651..19045675 (25 bp)
AGTTGCTGATCATATTCTCCTTTGC
NONE
Os.52004.1.S1_at--1027--7452Chr09:19045626..19045650 (25 bp)
GTGTCCTTTGAGCTTCTTTCATACA
NONE
Os.52004.1.S1_at--620--7852Chr09:19045562..19045586 (25 bp)
GGTATCATCCTTCGCGTAAACTTTG
NONE
Os.52004.1.S1_at--672--5752Chr09:19045516..19045540 (25 bp)
GACGGTCGTGTCTTGTTTCTACAAA
NONE
Target Sequence 
GCGTGTCGTCAGGTTGCACTAATTATCGCTGCTTGCAGCAAGTTATCGGTCGTTCTTCGGCTAGTTATCAAGATCAATCT
TACGTCGTGAAGATCGGGACAACAACCTCATCATCTGGTATCAGAGCCTCGGTTGCAACGGTAGGATTTTTACCCTTAGC
TACATATATATTTGTGTTCGTCCTATCCACTGAAAAAGCCATAAAAATATTCTGCTATAGCCCTTTGTTTCAATCTGTTA
TTCTTGTGAGTTTAGTTAATTTTCAGTCCATTAGAGTCTTGTTTTAGTTGCTGATCATATTCTCCTTTGCGTGTCCTTTG
AGCTTCTTTCATACATCTGCAAATCCATATATATAAAAAAAAATTCAGAAACCGGTATCATCCTTCGCGTAAACTTTGAT
CCTATCAAGTTAGAACGCTGACGGTCGTGTCTTGTTTCTACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis