Browse Element(s) Details


OsAffx.26937.1.S1_x_at

Description tigr:9633.m01570
TID=OsAffx.26937.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1760410/11SHR5-receptor-like kinase, putative, expressed
LOC_Os05g178103/11SHR5-receptor-like kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g17560OsAffx.10020.1.S1_x_at1/115+10067102..10067949retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17570Os.45173.1.S1_x_at2/115+10069172..10075965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17580Os.24831.3.S1_s_at11/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17580Os.24831.1.S1_x_at11/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17580Os.24831.3.S1_x_at8/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17580Os.53142.1.S1_at2/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17580Os.24831.4.S1_x_at1/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17580Os.23706.1.A1_x_at1/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17590OsAffx.22896.1.S1_x_at2/115+10081536..10084189retrotransposon protein, putative, unclassified
LOC_Os05g17590Os.45721.1.S1_x_at1/115+10081536..10084189retrotransposon protein, putative, unclassified
LOC_Os05g17604Os.27420.1.S1_at11/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604OsAffx.14742.1.S1_s_at11/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604Os.27420.1.S2_s_at11/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604OsAffx.26937.1.S1_x_at10/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604Os.27420.2.A1_s_at8/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604OsAffx.26937.4.S1_x_at4/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604OsAffx.14742.1.S1_x_at3/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17620NANA5+10116838..10118905hypothetical protein
LOC_Os05g17630OsAffx.22947.1.S1_x_at1/115+10121633..10128643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17630Os.23638.1.A1_x_at1/115+10121633..10128643retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26937.1.S1_x_at--1037--6512Chr05:10225369..10225393 (25 bp)
GATATTTTTGCATTCGGAGTGGTCA
LOC_Os05g17810
OsAffx.26937.1.S1_x_at--1138--5711Chr05:10092385..10092409 (25 bp)
GACTGTCGCTGGGAGACCAAACACC
LOC_Os05g17604
OsAffx.26937.1.S1_x_at--1113--1271NONE
AGATCTGTCTCCTTGAATGGGCATG
NONE
OsAffx.26937.1.S1_x_at--58--5212Chr05:10225600..10225624 (25 bp)
GAATTGTTGACCCAAGTCTCAAGGA
LOC_Os05g17810
OsAffx.26937.1.S1_x_at--377--271Chr05:10092142..10092166 (25 bp)
ATATGTTGCACTTGTCTGCACTCAG
LOC_Os05g17604
OsAffx.26937.1.S1_x_at--670--7212Chr05:10225737..10225761 (25 bp)
GTCGATGTGGCTAAGGTGGTCACCA
LOC_Os05g17810
OsAffx.26937.1.S1_x_at--583--8591Chr05:10092044..10092068 (25 bp)
TGGTCACCAAGCCAAGCTACATCAC
LOC_Os05g17604
OsAffx.26937.1.S1_x_at--206--2491Chr05:10091985..10092009 (25 bp)
AACACCACTAGCAGCTACGCATGGT
LOC_Os05g17604
OsAffx.26937.1.S1_x_at--434--9951Chr05:10091970..10091994 (25 bp)
TACGCATGGTCTAGCAACCCTGAGT
LOC_Os05g17604
OsAffx.26937.1.S1_x_at--198--6451Chr05:10091929..10091953 (25 bp)
GATCACTGAAGTTTCTCTCCAGGTG
LOC_Os05g17604
OsAffx.26937.1.S1_x_at--495--671Chr05:10091856..10091880 (25 bp)
ATGACGATATTGTAACTCCTTTTTT
LOC_Os05g17604
Target Sequence 
GATATTTTTGCATTCGGAGTGGTCATGTTGGAGACTGTCGCTGGGAGACCAAACACCGACAACTCCCTCGAGGAAAGCAA
GATCTGTCTCCTTGAATGGGCATGGGGCCTGTATGAAATGGATCAAGCACTTGGAATTGTTGACCCAAGTCTCAAGGAAT
TTGACAAGGATGAAGCTTTTAGAGTCATATATGTTGCACTTGTCTGCACTCAGGGCTCTCCGCACCAGCGACCGCCAATG
TCGAAGGTCGTGACAATGTTGACTGGAGATGTCGATGTGGCTAAGGTGGTCACCAAGCCAAGCTACATCACTGAGTGGCA
GCTTAGGGGTGGTGGGTACAGCAGCAACACCACTAGCAGCTACGCATGGTCTAGCAACCCTGAGTTGAGTAGGCAAAAAG
AGATCACTGAAGTTTCTCTCCAGGTGAGGTGAATTTAATGTAGAAAATCTATGGGCCATCTATATTGGTTTGAAATGACG
ATATTGTAACTCCTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26937.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis