Browse Element(s) Details


Os.27420.2.A1_s_at

Description gb:CB672928
DB_XREF= gi:29676653
DB_XREF=OSJNEe07D12.r
CLONE=OSJNEe07D12
TID=Os.27420.2
CNT=12
FEA=EST
TIER=Stack
STK=11
UG=Os.27420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-A03, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g176048/11SHR5-receptor-like kinase, putative, expressed
LOC_Os05g178108/11SHR5-receptor-like kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g17560OsAffx.10020.1.S1_x_at1/115+10067102..10067949retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17570Os.45173.1.S1_x_at2/115+10069172..10075965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17580Os.24831.3.S1_s_at11/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17580Os.24831.1.S1_x_at11/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17580Os.24831.3.S1_x_at8/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17580Os.53142.1.S1_at2/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17580Os.24831.4.S1_x_at1/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17580Os.23706.1.A1_x_at1/115+10078221..10081021retrotransposon protein, putative, unclassified
LOC_Os05g17590OsAffx.22896.1.S1_x_at2/115+10081536..10084189retrotransposon protein, putative, unclassified
LOC_Os05g17590Os.45721.1.S1_x_at1/115+10081536..10084189retrotransposon protein, putative, unclassified
LOC_Os05g17604Os.27420.1.S1_at11/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604OsAffx.14742.1.S1_s_at11/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604Os.27420.1.S2_s_at11/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604OsAffx.26937.1.S1_x_at10/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604Os.27420.2.A1_s_at8/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604OsAffx.26937.4.S1_x_at4/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17604OsAffx.14742.1.S1_x_at3/115+10091684..10105526SHR5-receptor-like kinase, putative, expressed
LOC_Os05g17620NANA5+10116838..10118905hypothetical protein
LOC_Os05g17630OsAffx.22947.1.S1_x_at1/115+10121633..10128643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17630Os.23638.1.A1_x_at1/115+10121633..10128643retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27420.2.A1_s_at--74--7412Chr05:10224081..10224105 (25 bp)
GTGATATTGCATGGATGCTGCATTG
LOC_Os05g17810
Os.27420.2.A1_s_at--403--1572Chr05:10225121..10225145 (25 bp)
AGCTAGTAATGTTCTACTTGACACT
LOC_Os05g17810
Os.27420.2.A1_s_at--230--4872Chr05:10225122..10225146 (25 bp)
GCTAGTAATGTTCTACTTGACACTA
LOC_Os05g17810
Os.27420.2.A1_s_at--720--3692Chr05:10225123..10225147 (25 bp)
CTAGTAATGTTCTACTTGACACTAA
LOC_Os05g17810
Os.27420.2.A1_s_at--703--10052Chr05:10225124..10225148 (25 bp)
TAGTAATGTTCTACTTGACACTAAT
LOC_Os05g17810
Os.27420.2.A1_s_at--291--1172Chr05:10225125..10225149 (25 bp)
AGTAATGTTCTACTTGACACTAATC
LOC_Os05g17810
Os.27420.2.A1_s_at--194--7072Chr05:10225126..10225150 (25 bp)
GTAATGTTCTACTTGACACTAATCT
LOC_Os05g17810
Os.27420.2.A1_s_at--383--9752Chr05:10225127..10225151 (25 bp)
TAATGTTCTACTTGACACTAATCTC
LOC_Os05g17810
Target Sequence 
GTGATATTGCATGGATGCTGCATTGATAGTAAAACACCCTTGTTGGTTTATGAGTACCTTGAAAATGGAAGCTTAGATCG
AGCAATCTTTNNNNNNNGTAACTTAAACCTAGACTGGGTAATGCGCTTCGAGATCATTTTAGGAATAGCAAGAGGGCTAA
CTTATCTTCATGAGGAGTCAAGTGTACGCATTGTGCATAGGGACATCAAAGCTAGTAATGTTCTACTTGACACTAATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27420.2.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis