Browse Element(s) Details


Os.54726.1.S1_at

Description gb:AK106612.1
DB_XREF= gi:32991821
TID=Os.54726.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-F10, full insert sequence.
FL= gb:AK106612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3193011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g3194011/11transposon protein, putative, unclassified
LOC_Os05g178309/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31506Os.39298.1.S1_at9/119+19014610..19015664cinnamoyl-CoA reductase, putative, expressed
LOC_Os09g31506Os.17520.1.S1_at1/119+19014610..19015664cinnamoyl-CoA reductase, putative, expressed
LOC_Os09g31510OsAffx.28370.1.S1_x_at4/119+19016021..19017668NAD dependent epimerase/dehydratase family protein
LOC_Os09g31510OsAffx.28370.1.S1_at2/119+19016021..19017668NAD dependent epimerase/dehydratase family protein
LOC_Os09g31514Os.17520.1.S1_at11/119+19019432..19023327NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g31518NANA9+19027679..19030331hypothetical protein
LOC_Os09g31522NANA9+19032498..19033092Dihydroflavonol-4-reductase, putative
LOC_Os09g31930Os.54726.1.S1_at11/119+19039335..19042165retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g31940Os.54726.1.S1_at11/119+19045871..19047659transposon protein, putative, unclassified
LOC_Os09g31940Os.52004.1.S1_at2/119+19045871..19047659transposon protein, putative, unclassified
LOC_Os09g31950NANA9+19049044..19055200retrotransposon protein, putative, unclassified
LOC_Os09g31960NANA9+19055825..19059115retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54726.1.S1_at--659--10174Chr09:19046607..19046631 (25 bp)
TATCAAGTCAGCTTTCCAATGCCAC
LOC_Os09g31940
Os.54726.1.S1_at--1127--1694Chr09:19046578..19046602 (25 bp)
ACCAAGTACTTTGGACTTCACACCA
LOC_Os09g31940
Os.54726.1.S1_at--169--4814Chr09:19046525..19046549 (25 bp)
GCTCTGAAGGCCAGGAGTCTGCTGA
LOC_Os09g31940
Os.54726.1.S1_at--660--4734Chr09:19046505..19046529 (25 bp)
GCTGAGTCAGCACGTTGGTACAAGT
LOC_Os09g31940
Os.54726.1.S1_at--423--9812Chr09:19046408..19046432 (25 bp)
TAACTTTCCAATGCAACTGACGGTG
LOC_Os09g31940
Os.54726.1.S1_at--725--5754Chr09:19046390..19046414 (25 bp)
GACGGTGCATCATTTGGACTTCCCA
LOC_Os09g31940
Os.54726.1.S1_at--357--10674Chr09:19046354..19046378 (25 bp)
TTGCCAAATTACTGAACACCACTCC
LOC_Os09g31940
Os.54726.1.S1_at--1124--1434Chr09:19046299..19046323 (25 bp)
AGAAGCCATTTCGTGGAGGCCCTTT
LOC_Os09g31940
Os.54726.1.S1_at--831--6212Chr09:19046284..19046308 (25 bp)
GAGGCCCTTTCACATTCTTAGTATT
LOC_Os09g31940
Os.54726.1.S1_at--1022--194Chr09:19046256..19046280 (25 bp)
ATTTCCATCTCGAATTCACACCTAT
LOC_Os09g31940
Os.54726.1.S1_at--254--10514Chr09:19046242..19046266 (25 bp)
TTCACACCTATCTAGCAGGGCTGTT
LOC_Os09g31940
Target Sequence 
TATCAAGTCAGCTTTCCAATGCCACCAATACCAAGTACTTTGGACTTCACACCAATGAGAACCAAGTACGTTTGTGAAGA
CTGCTCTGAAGGCCAGGAGTCTGCTGAGTCAGCACGTTGGTACAAGTTCATGTTCAAAACTGTACCAATCTACAATGTTT
CGTGGTGCATGTGATACATGGTTCAAAACATAGTGAAGTTAACTTTCCAATGCAACTGACGGTGCATCATTTGGACTTCC
CAAGTTGGAGTTATTGCCAAATTACTGAACACCACTCCAGAAGACCAACAGCCTCGCGAACCCACTTCAGAAGCCATTTC
GTGGAGGCCCTTTCACATTCTTAGTATTTTCATTTCCATCTCGAATTCACACCTATCTAGCAGGGCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis