Browse Element(s) Details


OsAffx.4364.1.S1_at

Description tigr:9633.m01593
TID=OsAffx.4364.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1780010/11SHR5-receptor-like kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g17760NANA5+10187601..10188946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17770Os.46314.2.S1_x_at4/115+10191230..10193666transposon protein, putative, unclassified
LOC_Os05g17770Os.47114.1.S1_x_at2/115+10191230..10193666transposon protein, putative, unclassified
LOC_Os05g17770Os.53142.1.S1_at2/115+10191230..10193666transposon protein, putative, unclassified
LOC_Os05g17770OsAffx.29667.1.S1_at1/115+10191230..10193666transposon protein, putative, unclassified
LOC_Os05g17780OsAffx.22896.1.S1_x_at1/115+10194574..10199529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17790Os.47999.3.S1_x_at1/115+10204347..10206657retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17800OsAffx.4364.1.S1_at10/115+10212685..10213940SHR5-receptor-like kinase, putative
LOC_Os05g17810OsAffx.26937.4.S1_x_at10/115+10219524..10225829SHR5-receptor-like kinase, putative
LOC_Os05g17810Os.27420.2.A1_s_at8/115+10219524..10225829SHR5-receptor-like kinase, putative
LOC_Os05g17810OsAffx.26937.1.S1_x_at3/115+10219524..10225829SHR5-receptor-like kinase, putative
LOC_Os05g17810Os.53303.1.S1_at1/115+10219524..10225829SHR5-receptor-like kinase, putative
LOC_Os05g17820NANA5+10229111..10229803retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17830Os.54726.1.S1_at9/115+10231258..10237448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17830Os.52004.1.S1_at3/115+10231258..10237448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17830OsAffx.21264.1.S1_x_at2/115+10231258..10237448retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4364.1.S1_at--1057--8431NONE
GGCCATCTATAGCGGCTGCTCTGAA
NONE
OsAffx.4364.1.S1_at--400--4811Chr05:10213394..10213418 (25 bp)
GCTCTGCAGCGGTTTTGCCACTGAT
LOC_Os05g17800
OsAffx.4364.1.S1_at--635--3771Chr05:10213395..10213419 (25 bp)
CTCTGCAGCGGTTTTGCCACTGATA
LOC_Os05g17800
OsAffx.4364.1.S1_at--1077--9471Chr05:10213396..10213420 (25 bp)
TCTGCAGCGGTTTTGCCACTGATAA
LOC_Os05g17800
OsAffx.4364.1.S1_at--959--9031Chr05:10213398..10213422 (25 bp)
TGCAGCGGTTTTGCCACTGATAAAA
LOC_Os05g17800
OsAffx.4364.1.S1_at--787--4671Chr05:10213402..10213426 (25 bp)
GCGGTTTTGCCACTGATAAAACTGA
LOC_Os05g17800
OsAffx.4364.1.S1_at--210--6811Chr05:10213405..10213429 (25 bp)
GTTTTGCCACTGATAAAACTGACTG
LOC_Os05g17800
OsAffx.4364.1.S1_at--618--3211Chr05:10213460..10213484 (25 bp)
CAAGTGCGATTGCACGGACAGCAAC
LOC_Os05g17800
OsAffx.4364.1.S1_at--744--1131Chr05:10213462..10213486 (25 bp)
AGTGCGATTGCACGGACAGCAACAA
LOC_Os05g17800
OsAffx.4364.1.S1_at--555--4351Chr05:10213504..10213858 (25 bp)
CCAGACTGAGGGTAACTAATTTGAA
LOC_Os05g17800
OsAffx.4364.1.S1_at--814--3411Chr05:10213505..10213859 (25 bp)
CAGACTGAGGGTAACTAATTTGAAT
LOC_Os05g17800
Target Sequence 
GGCCATCTATAGCGGCTGCTCTGAACACGATACTGGGGAGATGGGGCAAGAAGGCATCGCCGGAGTGGAACATCAGCGGC
GAGCTCTGCAGCGGTTTTGCCACTGATAAAACTGACTGGGATTACTACCCCAACATCAACCCGTTCATCAAGTGCGATTG
CACGGACAGCAACAACACCCTCTGCCACATTACCAGACTGAGGGTAACTAATTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis