Browse Element(s) Details


Os.53303.1.S1_at

Description gb:AK071908.1
DB_XREF= gi:32981931
TID=Os.53303.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53303 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013060N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060N22, full insert sequence.
FL= gb:AK071908.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4679911/11Peroxidase 3 precursor, putative, expressed
LOC_Os05g178101/11SHR5-receptor-like kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46740Os.55380.1.S1_at11/116+28387377..28388576Plastocyanin-like domain containing protein, expressed
LOC_Os06g46754Os.50821.1.S1_at10/116+28389335..28395009p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754Os.57130.1.S1_at10/116+28389335..28395009p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754OsAffx.28139.1.S1_at3/116+28389335..28395009p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46770Os.10139.1.S1_s_at11/116+28400733..28403579polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46770Os.57479.1.S1_x_at3/116+28400733..28403579polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46770Os.25748.1.S1_x_at1/116+28400733..28403579polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46780OsAffx.15958.1.S1_at9/116+28405288..28406220Protease inhibitor/seed storage/LTP family protein
LOC_Os06g46799Os.53303.1.S1_at11/116+28413036..28424516Peroxidase 3 precursor, putative, expressed
LOC_Os06g46799Os.5843.1.S1_at11/116+28413036..28424516Peroxidase 3 precursor, putative, expressed
LOC_Os06g46799Os.23700.1.A1_at1/116+28413036..28424516Peroxidase 3 precursor, putative, expressed
LOC_Os06g46820Os.17675.1.S1_at11/116+28425962..28429243expressed protein
LOC_Os06g46830OsAffx.28140.1.S1_at11/116+28429780..28430406hypothetical protein
LOC_Os06g46840OsAffx.30517.1.S1_at3/116+28432908..28433447pentatricopeptide, putative
LOC_Os06g46840Os.44826.1.S1_at1/116+28432908..28433447pentatricopeptide, putative
LOC_Os06g46850OsAffx.25502.2.S1_at4/116+28433792..28435210retrotransposon protein, putative, unclassified
LOC_Os06g46850Os.47130.4.A1_x_at1/116+28433792..28435210retrotransposon protein, putative, unclassified
LOC_Os06g46860OsAffx.28141.1.S1_at10/116+28439984..28443176hypothetical protein
LOC_Os06g46860OsAffx.988.1.S1_at1/116+28439984..28443176hypothetical protein
LOC_Os06g46870OsAffx.15958.1.S1_at11/116+28447781..28448967Protease inhibitor/seed storage/LTP family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0016020cellular_componentmembrane
GO:0004601molecular_functionperoxidase activity
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53303.1.S1_at--942--2851Chr06:28415624..28415648 (25 bp)
AAGTGCCGAAAATGTGTCTCTACGA
LOC_Os06g46799
Os.53303.1.S1_at--570--1396Chr12:4523594..4523614 (21 bp)
AGACGATTTTGAAAGTGCCTCTAAA
NONE
Os.53303.1.S1_at--930--28516Chr12:6401564..6401588 (25 bp)
AAGTGCCTCTAAAAAGTGTCTCTAG
NONE
Os.53303.1.S1_at--773--74516Chr12:4700009..4700033 (25 bp)
GTGTCTCTAGACTATAGAGCTTCAA
NONE
Os.53303.1.S1_at--1102--13512Chr12:4700024..4700048 (25 bp)
AGAGCTTCAAAACTTAGAGGCATTT
NONE
Os.53303.1.S1_at--845--6511Chr06:28415842..28415866 (25 bp)
GATATTGACACACTAACTGACCAAG
LOC_Os06g46799
Os.53303.1.S1_at--650--1571Chr06:28415922..28415946 (25 bp)
AGCTCTTGTACTGTCCTGTATCTGT
LOC_Os06g46799
Os.53303.1.S1_at--901--7251Chr06:28415934..28415958 (25 bp)
GTCCTGTATCTGTACTTGTGAGTTA
LOC_Os06g46799
Os.53303.1.S1_at--423--5551Chr06:28416023..28416047 (25 bp)
GAAACGTGATGTAACTGGCCTCCTA
LOC_Os06g46799
Os.53303.1.S1_at--815--8451Chr06:28416038..28416062 (25 bp)
TGGCCTCCTACTTCTCTGAGAGAGT
LOC_Os06g46799
Os.53303.1.S1_at--389--6011Chr06:28416057..28416081 (25 bp)
GAGAGTGACTATTTACTAATCCTTA
LOC_Os06g46799
Target Sequence 
AAGTGCCGAAAATGTGTCTCTACGAGATAAACTTAACAAAGTATACTAAAAATGTCTCTAGAGTAAAAATATTTTAGACG
ATTTTGAAAGTGCCTCTAAAAAGTGTCTCTAGACTATAGAGCTTCAAAACTTAGAGGCATTTTAAAAATTGTCTCTACAA
AAGATTCTTTATATAAGGTTTTTGATGTAGTGCTGTTTTATTTAGAGAGTGTAGCACAGATATTGACACACTAACTGACC
AAGATTTTTATTAACGTTAGTGGTTAAAGGTGTGCAAAAAATGCCAAGACAAACATTCAGCTCTTGTACTGTCCTGTATC
TGTACTTGTGAGTTAGTAGCAAATTAGTAGCTAGCTAGATTCTATAAAAGGGGGGAAGTGATGCAGCTTATATAAGGGAG
AAACGTGATGTAACTGGCCTCCTACTTCTCTGAGAGAGTGACTATTTACTAATCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis