Browse Element(s) Details


Os.17675.1.S1_at

Description gb:AK104993.2
DB_XREF= gi:42821608
TID=Os.17675.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-G09, full insert sequence.
FL= gb:AK104993.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4682011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46770Os.10139.1.S1_s_at11/116+28400733..28403579polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46770Os.57479.1.S1_x_at3/116+28400733..28403579polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46770Os.25748.1.S1_x_at1/116+28400733..28403579polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46780OsAffx.15958.1.S1_at9/116+28405288..28406220Protease inhibitor/seed storage/LTP family protein
LOC_Os06g46799Os.53303.1.S1_at11/116+28413036..28424516Peroxidase 3 precursor, putative, expressed
LOC_Os06g46799Os.5843.1.S1_at11/116+28413036..28424516Peroxidase 3 precursor, putative, expressed
LOC_Os06g46799Os.23700.1.A1_at1/116+28413036..28424516Peroxidase 3 precursor, putative, expressed
LOC_Os06g46820Os.17675.1.S1_at11/116+28425962..28429243expressed protein
LOC_Os06g46830OsAffx.28140.1.S1_at11/116+28429780..28430406hypothetical protein
LOC_Os06g46840OsAffx.30517.1.S1_at3/116+28432908..28433447pentatricopeptide, putative
LOC_Os06g46840Os.44826.1.S1_at1/116+28432908..28433447pentatricopeptide, putative
LOC_Os06g46850OsAffx.25502.2.S1_at4/116+28433792..28435210retrotransposon protein, putative, unclassified
LOC_Os06g46850Os.47130.4.A1_x_at1/116+28433792..28435210retrotransposon protein, putative, unclassified
LOC_Os06g46860OsAffx.28141.1.S1_at10/116+28439984..28443176hypothetical protein
LOC_Os06g46860OsAffx.988.1.S1_at1/116+28439984..28443176hypothetical protein
LOC_Os06g46870OsAffx.15958.1.S1_at11/116+28447781..28448967Protease inhibitor/seed storage/LTP family protein
LOC_Os06g46880OsAffx.15959.1.S1_s_at11/116+28451973..28455564Surp module family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17675.1.S1_at--1090--7791Chr06:28428672..28428696 (25 bp)
GGTCTCACGATCCAAGTTCCAATTG
LOC_Os06g46820
Os.17675.1.S1_at--513--7511Chr06:28428705..28428729 (25 bp)
GTGGATACACTAACAGGTCATGCTC
LOC_Os06g46820
Os.17675.1.S1_at--682--9611Chr06:28428722..28428746 (25 bp)
TCATGCTCCTCATCTATTGGACTAC
LOC_Os06g46820
Os.17675.1.S1_at--351--31Chr06:28428737..28428761 (25 bp)
ATTGGACTACATCGGAGCTGCTGCT
LOC_Os06g46820
Os.17675.1.S1_at--213--10851Chr06:28428765..28428789 (25 bp)
TTGGTCGGTTTTGCTGGCATCAACA
LOC_Os06g46820
Os.17675.1.S1_at--1010--8491Chr06:28428779..28428803 (25 bp)
TGGCATCAACATACCTGTAGGCACT
LOC_Os06g46820
Os.17675.1.S1_at--195--951Chr06:28428826..28428850 (25 bp)
AGGAAACTCCTATCGTCAGTATGGT
LOC_Os06g46820
Os.17675.1.S1_at--231--2291Chr06:28428929..28428953 (25 bp)
AAATGCTACTGGTGCTGTTCAATAA
LOC_Os06g46820
Os.17675.1.S1_at--69--8791Chr06:28428944..28428968 (25 bp)
TGTTCAATAAGGACCGGCTTGGCTT
LOC_Os06g46820
Os.17675.1.S1_at--279--3951Chr06:28428958..28428982 (25 bp)
CGGCTTGGCTTTGGAGTTTGTCACA
LOC_Os06g46820
Os.17675.1.S1_at--376--11Chr06:28429158..28429182 (25 bp)
ACTAGCCAGTTGTGTTCGTTTTTGA
LOC_Os06g46820
Target Sequence 
GGTCTCACGATCCAAGTTCCAATTGCTGCCANTTGTGGATACACTAACAGGTCATGCTCCTCATCTATTGGACTACATCG
GAGCTGCTGCTGTGTTGGTCGGTTTTGCTGGCATCAACATACCTGTAGGCACTCCACAGGGTTCTCAGCAAGAGCAGGAA
ACTCCTATCGTCAGTATGGTTGATGATCCAGTCCATTTACCAAGTGATAGAAATGCTACTAGCATGGTTGATGATCCAGT
CTATTTACCAAGTGATAGAAATGCTACTGGTGCTGTTCAATAAGGACCGGCTTGGCTTTGGAGTTTGTCACAATGTATAT
TTTTTTCGAGGAAAATTTTCATAATGTATATTATCAAGTAATGTATAAGGATGCGAGATCAGTACAGTTACTGTAATTGT
TCCCCCTTGCCATGAAAATCATAGAGAAGGGGATAGACAGGGATTGAAATTAGATTNAACATGCTTTCCNTTGCTCATAA
TTTTGAGCAACTAGCCAGTTGTGTTCGTTTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis