Browse Element(s) Details


OsAffx.30517.1.S1_at

Description tigr:9638.m01988
TID=OsAffx.30517.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2383011/11pentatricopeptide, putative
LOC_Os06g468403/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23820Os.46341.1.S1_at5/1110+11883559..11885022Transferase family protein, expressed
LOC_Os10g23830OsAffx.30517.1.S1_at11/1110+11892523..11892996pentatricopeptide, putative
LOC_Os10g23840OsAffx.20425.1.S1_at8/1110+11893585..11893926hypothetical protein
LOC_Os10g23840OsAffx.20425.1.S1_x_at6/1110+11893585..11893926hypothetical protein
LOC_Os10g23860NANA10+11905648..11907040hypothetical protein
LOC_Os10g23870NANA10+11908080..11910038hypothetical protein
LOC_Os10g23880Os.51869.1.S1_at10/1110+11914169..11921133retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30517.1.S1_at--988--5871Chr10:11892622..11892646 (25 bp)
GAGCGCGAGCAGGATGTGGCCGTGC
LOC_Os10g23830
OsAffx.30517.1.S1_at--903--8411Chr10:11892639..11892663 (25 bp)
GGCCGTGCGCGAGAAGGCTGTTGAA
LOC_Os10g23830
OsAffx.30517.1.S1_at--1040--2591Chr10:11892662..11892686 (25 bp)
AACGCTGGCCGGTACGAGGCTTGCT
LOC_Os10g23830
OsAffx.30517.1.S1_at--1086--3891Chr10:11892694..11892718 (25 bp)
CTGGTCGCTGGGTCTCGCCGGTATA
LOC_Os10g23830
OsAffx.30517.1.S1_at--768--8631Chr10:11892702..11892726 (25 bp)
TGGGTCTCGCCGGTATACCTACATA
LOC_Os10g23830
OsAffx.30517.1.S1_at--369--4491Chr10:11892710..11892734 (25 bp)
GCCGGTATACCTACATATCCATGAT
LOC_Os10g23830
OsAffx.30517.1.S1_at--1099--9951Chr10:11892717..11892741 (25 bp)
TACCTACATATCCATGATCCTGGGT
LOC_Os10g23830
OsAffx.30517.1.S1_at--929--4652Chr10:11892844..11892868 (25 bp)
GCGTGCTGTCATGCCGGACTCATCG
LOC_Os10g23830
OsAffx.30517.1.S1_at--637--3871Chr10:11892849..11892873 (25 bp)
CTGTCATGCCGGACTCATCGAGGAG
LOC_Os10g23830
OsAffx.30517.1.S1_at--1024--9213Chr10:11892878..11892902 (25 bp)
TCCAGCAACTCGACGCCATGAGGAG
LOC_Os10g23830
OsAffx.30517.1.S1_at--623--2534Chr10:11892884..11892908 (25 bp)
AACTCGACGCCATGAGGAGGAACGA
LOC_Os10g23830
Target Sequence 
GAGCGCGAGCAGGATGTGGCCGTGCGCGAGAAGGCTGTTGAACGCTGGCCGGTACGAGGCTTGCTGCGGCCGCTGGTCGC
TGGGTCTCGCCGGTATACCTACATATCCATGATCCTGGGTCTCGCAATGCACGGCCGCGGCGAGGATGCCCTGTCTCTAT
TCGCCAGCATGCAACGAGCCGGCGTGACGCCGAACGAGGTGACCCTCCTCGGCGTCCTCACGGCGTGCTGTCATGCCGGA
CTCATCGAGGAGGGGCTCCAGCAACTCGACGCCATGAGGAGGAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis