Browse Element(s) Details


Os.46341.1.S1_at

Description gb:AK060656.1
DB_XREF= gi:32970674
TID=Os.46341.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.46341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative anthranilate N-benzoyltransferase (OSJNBa0032N04.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-A04, full insert sequence.
FL= gb:AK066965.1 gb:AK060656.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g238205/11Transferase family protein, expressed
LOC_Os10g233102/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23320OsAffx.18363.1.S1_at11/1110+11859517..11859979hypothetical protein
LOC_Os10g23820Os.46341.1.S1_at5/1110+11883559..11885022Transferase family protein, expressed
LOC_Os10g23830OsAffx.30517.1.S1_at11/1110+11892523..11892996pentatricopeptide, putative
LOC_Os10g23840OsAffx.20425.1.S1_at8/1110+11893585..11893926hypothetical protein
LOC_Os10g23840OsAffx.20425.1.S1_x_at6/1110+11893585..11893926hypothetical protein
LOC_Os10g23860NANA10+11905648..11907040hypothetical protein
LOC_Os10g23870NANA10+11908080..11910038hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46341.1.S1_at--503--2172Chr10:11884538..11884562 (25 bp)
ACACGCAGGTGAGGGTCGCCGTCAA
LOC_Os10g23820
Os.46341.1.S1_at--865--4051Chr10:11884631..11884655 (25 bp)
CGAGGATGAGAGTCCGGGACCTCCT
LOC_Os10g23820
Os.46341.1.S1_at--564--4571Chr10:11884704..11884728 (25 bp)
GCGCGTCGACGAGCAGTACATCCAG
LOC_Os10g23820
Os.46341.1.S1_at--210--6752Chr10:11884836..11884860 (25 bp)
GTTCAGGTTCCACGACCTCGACTTC
LOC_Os10g23820
Os.46341.1.S1_at--729--7631NONE
GGGATGCTCATCTTCGTGCCGTCGT
NONE
Os.46341.1.S1_at--1051--9371NONE
TCGAGATGTACATGGCGCTCGACGA
NONE
Os.46341.1.S1_at--237--1911NONE
ACGTCGACGCTTTCAGGCAAATCTG
NONE
Os.46341.1.S1_at--548--5131Chr10:11884998..11885022 (25 bp)
GCAAATCTGCTACTCCATGGACTGA
LOC_Os10g23820
Os.46341.1.S1_at--257--851NONE
ATGGACTGATCACGACTGTCACAAA
NONE
Os.46341.1.S1_at--211--2251NONE
AAATATTACTCCTATGTGTACCATA
NONE
Os.46341.1.S1_at--624--1171NONE
AGTACAACAACAGCGTGCATATTTG
NONE
Target Sequence 
ACACGCAGGTGAGGGTCGCCGTCAACTGCCGCGGCCGCGCCAGCCCGGCGGTGCCCATGGACTACTTTGGCAACATGGTG
CTCTGGGCGTTCCCGAGGATGAGAGTCCGGGACCTCCTCTCCGCCAGCTACGCCACGGTGGTCGGCGTCATCCGCGAGGC
CGTGGCGCGCGTCGACGAGCAGTACATCCAGTCGTTCGTGGACTTCGGGGAGGTGGCCGTCGGCGACGAGCTGACGCCGA
CAGCGGCGCCGCCGGGCACGGTGTTCTGCCCGGACCTGGAGGTGGACAGCTGGCTAGGGTTCAGGTTCCACGACCTCGAC
TTCGGCCGTGGCCCGCCGTGCGCGTTCCTGCCGCCGGACCTGCCCGTCGAGGGGATGCTCATCTTCGTGCCGTCGTGCGC
GGCGAAGGGCGGCGTCGAGATGTACATGGCGCTCGACGACCTCCACGTCGACGCTTTCAGGCAAATCTGCTACTCCATGG
ACTGATCACGACTGTCACAAAAATATTACTCCTATGTGTACCATATTGTTAGTTTGTTACAAGTACAACAACAGCGTGCA
TATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis