Browse Element(s) Details


OsAffx.18363.1.S1_at

Description tigr:9638.m01986
TID=OsAffx.18363.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2332011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23300OsAffx.18362.1.S1_at11/1110+11843927..11844995hypothetical protein
LOC_Os10g23310Os.46341.1.S1_at2/1110+11849955..11851661Transferase family protein, expressed
LOC_Os10g23320OsAffx.18363.1.S1_at11/1110+11859517..11859979hypothetical protein
LOC_Os10g23820Os.46341.1.S1_at5/1110+11883559..11885022Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18363.1.S1_at--265--7571Chr10:11859858..11859882 (25 bp)
GGGCGACGGATCTAACCCCGGCGAT
LOC_Os10g23320
OsAffx.18363.1.S1_at--93--9531Chr10:11859848..11859872 (25 bp)
TCTAACCCCGGCGATGAGTGTGGGC
LOC_Os10g23320
OsAffx.18363.1.S1_at--683--7591Chr10:11859819..11859843 (25 bp)
GGGCATACGATCCAACGCTGACGAC
LOC_Os10g23320
OsAffx.18363.1.S1_at--281--4811Chr10:11859667..11859754 (25 bp)
GCTCTGGCGCCGGTATAAGCGATCA
LOC_Os10g23320
OsAffx.18363.1.S1_at--36--4051Chr10:11859638..11859662 (25 bp)
CGAAAAACCCATTTTCGCATGCGGT
LOC_Os10g23320
OsAffx.18363.1.S1_at--677--9131Chr10:11859619..11859643 (25 bp)
TGCGGTTGCGCTGGTTGCATACGAA
LOC_Os10g23320
OsAffx.18363.1.S1_at--285--4571Chr10:11859612..11859636 (25 bp)
GCGCTGGTTGCATACGAAAATCGTG
LOC_Os10g23320
OsAffx.18363.1.S1_at--872--10731Chr10:11859583..11859607 (25 bp)
TTGCAGACCTTTTGGCGTATGCGGT
LOC_Os10g23320
OsAffx.18363.1.S1_at--619--4311Chr10:11859576..11859600 (25 bp)
CCTTTTGGCGTATGCGGTTGGTACA
LOC_Os10g23320
OsAffx.18363.1.S1_at--1082--3951Chr10:11859562..11859586 (25 bp)
CGGTTGGTACAACCGCATGCAAAAA
LOC_Os10g23320
OsAffx.18363.1.S1_at--859--4972Chr07:8542295..8542317 (22 bp)
GCATGCAAAAATCCTTTTGGCCCGT
NONE
Target Sequence 
GGGCGACGGATCTAACCCCGGCGATGAGTGTGGGCGGTGGGGCATACGATCCAACGCTGACGACGACTACGGGCGGTGGA
TCGGACGCTCCGACGGCGTGTGACGGGCTCTGGCGCCGGTATAAGCGATCAAATGCGAAAAACCCATTTTCGCATGCGGT
TGCGCTGGTTGCATACGAAAATCGTGATTTTTGCAGACCTTTTGGCGTATGCGGTTGGTACAACCGCATGCAAAAATCCT
TTTGGCCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis