Browse Element(s) Details


OsAffx.20425.1.S1_at

Description gb:NM_196172.1
DB_XREF= gi:37533703
TID=OsAffx.20425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0032N04.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g238408/11hypothetical protein
LOC_Os12g346401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23820Os.46341.1.S1_at5/1110+11883559..11885022Transferase family protein, expressed
LOC_Os10g23830OsAffx.30517.1.S1_at11/1110+11892523..11892996pentatricopeptide, putative
LOC_Os10g23840OsAffx.20425.1.S1_at8/1110+11893585..11893926hypothetical protein
LOC_Os10g23840OsAffx.20425.1.S1_x_at6/1110+11893585..11893926hypothetical protein
LOC_Os10g23860NANA10+11905648..11907040hypothetical protein
LOC_Os10g23870NANA10+11908080..11910038hypothetical protein
LOC_Os10g23880Os.51869.1.S1_at10/1110+11914169..11921133retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20425.1.S1_at--124--8331Chr10:11893694..11893718 (25 bp)
GGCTCGTGTCGCTCTACTGCTCATT
LOC_Os10g23840
OsAffx.20425.1.S1_at--808--8711Chr10:11893700..11893724 (25 bp)
TGTCGCTCTACTGCTCATTGTCTGA
LOC_Os10g23840
OsAffx.20425.1.S1_at--1046--4811Chr10:11893704..11893728 (25 bp)
GCTCTACTGCTCATTGTCTGACGTG
LOC_Os10g23840
OsAffx.20425.1.S1_at--517--9531Chr10:11893706..11893730 (25 bp)
TCTACTGCTCATTGTCTGACGTGGA
LOC_Os10g23840
OsAffx.20425.1.S1_at--676--9911Chr10:11893708..11893732 (25 bp)
TACTGCTCATTGTCTGACGTGGAGG
LOC_Os10g23840
OsAffx.20425.1.S1_at--876--3831Chr10:11893710..11893734 (25 bp)
CTGCTCATTGTCTGACGTGGAGGAC
LOC_Os10g23840
OsAffx.20425.1.S1_at--1097--4811Chr10:11893712..11893736 (25 bp)
GCTCATTGTCTGACGTGGAGGACAG
LOC_Os10g23840
OsAffx.20425.1.S1_at--72--1671Chr10:11893858..11893881 (24 bp)
AGCGCCACGCGGTTCGGGACGCGGA
LOC_Os10g23840
OsAffx.20425.1.S1_at--311--6478Chr11:2069874..2069994 (25 bp)
GATAAATTACGATAATACCCTACGA
NONE
OsAffx.20425.1.S1_at--739--1812Chr10:11894212..11894236 (25 bp)
ACCCTACGAAAATTATTATCTCTTG
NONE
OsAffx.20425.1.S1_at--749--1832Chr10:11894217..11894241 (25 bp)
ACGAAAATTATTATCTCTTGACAAA
NONE
Target Sequence 
GGCTCGTGTCGCTCTACTGCTCATTGTCTGACGTGGAGGACAGGAGGCTCCGCGTGGACGCGCTGCTCGCCGAGGGCGTC
GCGCGCGTCACATCCACGGACCAGTCGCTCCTGCTCTGGCTCGCGTGTGGCGAGGTCGTGGCGGACCTCGACTGTGCCGC
CGGCAGCGCCACGCGGTTCGGGACGCGGAGCGCGACGAAGCAGTTCAGGAAGATGGAGCGGCACGTGGCCGCGACGGCGA
AGCTGTACGCGGAGATGGACGCAGTCAGCGAGCTGGAGAAGGCAGCGAGGGCGGGGGAGGCGACGACGCTGGATGGGGAG
GAGACACCAGGACAGGCGACGGAGGTGGAATGGAGGGGATCGGCCGACGAAGGAGAGGGATGGAAAGGAATTATACTGAT
AAATTACGATAATACCCTACGAAAATTATTATCTCTTGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis