Browse Element(s) Details

OsAffx.15959.1.S1_s_at

Description

tigr:9634.m04562
TID=OsAffx.15959.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Surp module, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g46880	11/11	Surp module family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g46820	Os.17675.1.S1_at	11/11	6	+	28425962..28429243	expressed protein
LOC_Os06g46830	OsAffx.28140.1.S1_at	11/11	6	+	28429780..28430406	hypothetical protein
LOC_Os06g46840	OsAffx.30517.1.S1_at	3/11	6	+	28432908..28433447	pentatricopeptide, putative
LOC_Os06g46840	Os.44826.1.S1_at	1/11	6	+	28432908..28433447	pentatricopeptide, putative
LOC_Os06g46850	OsAffx.25502.2.S1_at	4/11	6	+	28433792..28435210	retrotransposon protein, putative, unclassified
LOC_Os06g46850	Os.47130.4.A1_x_at	1/11	6	+	28433792..28435210	retrotransposon protein, putative, unclassified
LOC_Os06g46860	OsAffx.28141.1.S1_at	10/11	6	+	28439984..28443176	hypothetical protein
LOC_Os06g46860	OsAffx.988.1.S1_at	1/11	6	+	28439984..28443176	hypothetical protein
LOC_Os06g46870	OsAffx.15958.1.S1_at	11/11	6	+	28447781..28448967	Protease inhibitor/seed storage/LTP family protein
LOC_Os06g46880	OsAffx.15959.1.S1_s_at	11/11	6	+	28451973..28455564	Surp module family protein, expressed
LOC_Os06g46890	Os.14747.1.S1_at	11/11	6	+	28456955..28462486	expressed protein
LOC_Os06g46900	Os.11106.1.S1_at	11/11	6	+	28462800..28465239	phosphosulfolactate synthase-related protein, putative, expressed
LOC_Os06g46910	Os.50189.1.S1_at	11/11	6	+	28466986..28470156	zinc finger family protein, putative, expressed
LOC_Os06g46910	Os.50189.2.S1_at	11/11	6	+	28466986..28470156	zinc finger family protein, putative, expressed
LOC_Os06g46920	Os.52555.1.S1_at	11/11	6	+	28469176..28471150	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g46930	Os.7589.1.S1_at	11/11	6	+	28471589..28473781	50S ribosomal protein L24, chloroplast precursor, putative, expressed
LOC_Os06g46940	Os.49601.1.S1_at	9/11	6	+	28476209..28479889	Cyanogenic beta-glucosidase precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006396	biological_process	RNA processing
GO:0003723	molecular_function	RNA binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15959.1.S1_s_at--974--69	1	Chr06:28452550..28452574 (25 bp)	ATGAGAGGGACATTCCTGCTCGCAA	LOC_Os06g46880
OsAffx.15959.1.S1_s_at--156--289	1	Chr06:28452527..28452551 (25 bp)	AAGGGTGGTGCATGTATTCCTCCCC	LOC_Os06g46880
OsAffx.15959.1.S1_s_at--587--335	1	Chr06:28452502..28452526 (25 bp)	CACCCAACTTGCTTGTAAACCTTGA	LOC_Os06g46880
OsAffx.15959.1.S1_s_at--326--589	1	Chr06:28452412..28452436 (25 bp)	GAGCGTCTGCCGATCCAAATGAGAT	LOC_Os06g46880
OsAffx.15959.1.S1_s_at--799--887	1	Chr06:28452375..28452399 (25 bp)	TGATGTCTACTCTTCATATCGCAAA	LOC_Os06g46880
OsAffx.15959.1.S1_s_at--1066--617	1	Chr06:28452348..28452372 (25 bp)	GAGGAGCAGTACATACCACTCTTCC	LOC_Os06g46880
OsAffx.15959.1.S1_s_at--202--539	1	Chr06:28452287..28452311 (25 bp)	GAAGCATCATATGAACCCTTTCCTC	LOC_Os06g46880
OsAffx.15959.1.S1_s_at--76--75	1	Chr06:28452175..28452199 (25 bp)	ATGTTTCTTCCAGTATCTTCTTGTA	LOC_Os06g46880
OsAffx.15959.1.S1_s_at--351--883	1	Chr06:28452096..28452120 (25 bp)	TGATATTCTTTCCAAGCTTCCAGTC	LOC_Os06g46880
OsAffx.15959.1.S1_s_at--997--243	1	Chr06:28452069..28452093 (25 bp)	AAAATGTGGCTTCAGTCACTGGGAC	LOC_Os06g46880
OsAffx.15959.1.S1_s_at--675--709	1	Chr06:28452055..28452079 (25 bp)	GTCACTGGGACAGGATTGCTGCTCA	LOC_Os06g46880

Target Sequence

ATGAGAGGGACATTCCTGCTCGCAAGGGTGGTGCATGTATTCCTCCCCCACCCAACTTGCTTGTAAACCTTGAGACAGGG
ATGCGTGCAGATGGTTCGGTTGATAGTAAACCGGGGTCAACTGGCCGATTGGGCCTTGGAGCGTCTGCCGATCCAAATGA
GATCGGCCAGTATGATGATGTCTACTCTTCATATCGCAAACAGAGGAGCAGTACATACCACTCTTCCATCAGTGCTCGCT
CATTAGCACCAAAGTGAACGGCAGAAGCATCATATGAACCCTTTCCTCATCTGTGTAGGACTGTACTTAAATGAACAGAA
TTGGCTTATCAAATGATTGTACGATGCAACTATGTATTGTCACCAGTAGCAAATGATGTTTCTTCCAGTATCTTCTTGTA
AGAGGGGTTTTGATCGAGCTGATTTTGTTGGCGTTTTTAGTTCAGATTTGGAGTTGATATTCTTTCCAAGCTTCCAGTCC
TAAAATGTGGCTTCAGTCACTGGGACAGGATTGCTGCTCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis