Browse Element(s) Details


Os.52555.1.S1_at

Description gb:AK067955.1
DB_XREF= gi:32977973
TID=Os.52555.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52555 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013126J18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126J18, full insert sequence.
FL= gb:AK067955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4692011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46870OsAffx.15958.1.S1_at11/116+28447781..28448967Protease inhibitor/seed storage/LTP family protein
LOC_Os06g46880OsAffx.15959.1.S1_s_at11/116+28451973..28455564Surp module family protein, expressed
LOC_Os06g46890Os.14747.1.S1_at11/116+28456955..28462486expressed protein
LOC_Os06g46900Os.11106.1.S1_at11/116+28462800..28465239phosphosulfolactate synthase-related protein, putative, expressed
LOC_Os06g46910Os.50189.1.S1_at11/116+28466986..28470156zinc finger family protein, putative, expressed
LOC_Os06g46910Os.50189.2.S1_at11/116+28466986..28470156zinc finger family protein, putative, expressed
LOC_Os06g46920Os.52555.1.S1_at11/116+28469176..28471150NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g46930Os.7589.1.S1_at11/116+28471589..2847378150S ribosomal protein L24, chloroplast precursor, putative, expressed
LOC_Os06g46940Os.49601.1.S1_at9/116+28476209..28479889Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os06g46950Os.7902.1.S1_at11/116+28482814..28483492EF-hand Ca2+-binding protein CCD1, putative, expressed
LOC_Os06g46960NANA6+28486836..28487644RNase H domain-containing protein, putative
LOC_Os06g46970Os.4940.1.S1_at11/116+28489033..28489686expressed protein
LOC_Os06g46980Os.56964.1.S1_at11/116+28492189..28492849expressed protein
LOC_Os06g46990Os.51830.1.S1_at11/116+28494282..28496333expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009718biological_processanthocyanin biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0009985molecular_functiondihydroflavonol(thiole) lyase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016614molecular_functionoxidoreductase activity, acting on CH-OH group of donors
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
GO:0045552molecular_functiondihydrokaempferol 4-reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52555.1.S1_at--117--10751Chr06:28469979..28470003 (25 bp)
TTGACGCCGAATGTGCCTACCAGCA
LOC_Os06g46920
Os.52555.1.S1_at--622--5411Chr06:28469807..28469831 (25 bp)
GAAGCTGTATTCTCTGCTGGCATCT
LOC_Os06g46920
Os.52555.1.S1_at--136--491Chr06:28469786..28469810 (25 bp)
ATCTGTGCACTCCAGGTTCGGGTGT
LOC_Os06g46920
Os.52555.1.S1_at--193--7291Chr06:28469761..28469785 (25 bp)
GTGCCATTGGCACACATCCAGGACG
LOC_Os06g46920
Os.52555.1.S1_at--1162--5791Chr06:28469731..28469755 (25 bp)
GACGCTCACGTGTTCTTGATGGAGA
LOC_Os06g46920
Os.52555.1.S1_at--307--1071Chr06:28469672..28469696 (25 bp)
AGGGAGCTATCCGATGGCCCAGATT
LOC_Os06g46920
Os.52555.1.S1_at--869--1251Chr06:28469652..28469676 (25 bp)
AGATTGCTCAGATTCTGTCCTTGCA
LOC_Os06g46920
Os.52555.1.S1_at--264--8311Chr06:28469442..28469466 (25 bp)
GGCTCAAACCCGTCGGTGGTATCGT
LOC_Os06g46920
Os.52555.1.S1_at--548--5491Chr06:28469359..28469383 (25 bp)
GAACAGCGTCGTACAGTGCGTTGAT
LOC_Os06g46920
Os.52555.1.S1_at--183--831Chr06:28469333..28469357 (25 bp)
ATGGATTCCTGCAGGATCCCGACAG
LOC_Os06g46920
Os.52555.1.S1_at--1139--2811Chr06:28469246..28469270 (25 bp)
AAGTTGCTGTCTGGTTGGGCCTGAA
LOC_Os06g46920
Target Sequence 
TTGACGCCGAATGTGCCTACCAGCATCCAGCTCCTCCTCTCACCAATTACAGGTGATCCGAAGCTGTATTCTCTGCTGGC
ATCTGTGCACTCCAGGTTCGGGTGTGTGCCATTGGCACACATCCAGGACGTGTGCGACGCTCACGTGTTCTTGATGGAGA
CGGAGCAAGCGGATGGACGGTATCTGTGCGCCGGAGGGAGCTATCCGATGGCCCAGATTGCTCAGATTCTGTCCTTGCAC
TACCCTCCTTTCAAACCTGCAAAAAGGTTAAGCAAAGATTTCCATGGCTCAAACCCGTCGGTGGTATCGTCCAAGCGGCT
GAGGGATTTGGGGTTCAGGTTCGAGTATGATGTTGAGGAAATCATCAAGAACAGCGTCGTACAGTGCGTTGATCATGGAT
TCCTGCAGGATCCCGACAGTTCCAACTGTTAGTGGTAGTAGAGTAGTGAGTAGTGACGCTCAGTGAGACAGTGACTGAGC
CAAGTTGCTGTCTGGTTGGGCCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis