Browse Element(s) Details

Os.51830.1.S1_at

Description

gb:AK063941.1
DB_XREF= gi:32973959
TID=Os.51830.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51830 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033083G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-E04, full insert sequence.
FL= gb:AK063941.1 gb:AK102096.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g46990	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g46910	Os.50189.1.S1_at	11/11	6	+	28466986..28470156	zinc finger family protein, putative, expressed
LOC_Os06g46910	Os.50189.2.S1_at	11/11	6	+	28466986..28470156	zinc finger family protein, putative, expressed
LOC_Os06g46920	Os.52555.1.S1_at	11/11	6	+	28469176..28471150	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g46930	Os.7589.1.S1_at	11/11	6	+	28471589..28473781	50S ribosomal protein L24, chloroplast precursor, putative, expressed
LOC_Os06g46940	Os.49601.1.S1_at	9/11	6	+	28476209..28479889	Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os06g46950	Os.7902.1.S1_at	11/11	6	+	28482814..28483492	EF-hand Ca2+-binding protein CCD1, putative, expressed
LOC_Os06g46960	NA	NA	6	+	28486836..28487644	RNase H domain-containing protein, putative
LOC_Os06g46970	Os.4940.1.S1_at	11/11	6	+	28489033..28489686	expressed protein
LOC_Os06g46980	Os.56964.1.S1_at	11/11	6	+	28492189..28492849	expressed protein
LOC_Os06g46990	Os.51830.1.S1_at	11/11	6	+	28494282..28496333	expressed protein
LOC_Os06g47000	Os.28370.1.A1_s_at	11/11	6	+	28503187..28507810	EF hand family protein, expressed
LOC_Os06g47000	Os.49375.1.S1_at	11/11	6	+	28503187..28507810	EF hand family protein, expressed
LOC_Os06g47010	NA	NA	6	+	28512372..28512962	retrotransposon protein, putative, unclassified
LOC_Os06g47020	OsAffx.15960.1.S1_at	11/11	6	+	28513438..28514082	ZmEBE-2 protein, putative

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.51830.1.S1_at--665--317	1	Chr06:28495782..28495806 (25 bp)	AATTGGTCGGGAAGCGCTCGTTCTT	LOC_Os06g46990
Os.51830.1.S1_at--592--263	1	Chr06:28495878..28495902 (25 bp)	AACCACCATGGTTTGATCCGTTCCT	LOC_Os06g46990
Os.51830.1.S1_at--207--967	1	Chr06:28495912..28495936 (25 bp)	TCAGCTCCGTCTTCTTCTTGAGTGT	LOC_Os06g46990
Os.51830.1.S1_at--924--289	1	Chr06:28495939..28495963 (25 bp)	AAGGTGCCTGCTTATCTTGAGCTAG	LOC_Os06g46990
Os.51830.1.S1_at--852--859	1	Chr06:28496008..28496032 (25 bp)	TGGTCCGGCTACTGTTACATTCATA	LOC_Os06g46990
Os.51830.1.S1_at--72--13	1	Chr06:28496026..28496050 (25 bp)	ATTCATATCTCATGGTCTGGTTCCT	LOC_Os06g46990
Os.51830.1.S1_at--729--1039	1	Chr06:28496075..28496099 (25 bp)	TTTTGTCAAGGCCTTCCTATGCTAG	LOC_Os06g46990
Os.51830.1.S1_at--653--869	1	Chr06:28496168..28496192 (25 bp)	TGTGCTCTTTGGTTTGAGACTTCGA	LOC_Os06g46990
Os.51830.1.S1_at--178--287	1	Chr06:28496227..28496251 (25 bp)	AAGTGGCTTACTGATTTCCCTACAT	LOC_Os06g46990
Os.51830.1.S1_at--127--209	1	Chr06:28496248..28496272 (25 bp)	ACATTTTGTCTTTAGCTGCTTCCTT	LOC_Os06g46990
Os.51830.1.S1_at--1121--325	1	Chr06:28496308..28496332 (25 bp)	CAAACTGACACCTCTATTTTTTCCT	LOC_Os06g46990

Target Sequence

AATTGGTCGGGAAGCGCTCGTTCTTCACGGCTGCAGCCGAGGACGGGCGGGCGCTCGACGTCGAAGCACCCGAGGCGGTC
GCAGAAGCTTGAGATGAACCACCATGGTTTGATCCGTTCCTTCCATCAGCTCAGCTCCGTCTTCTTCTTGAGTGTTCAAG
GTGCCTGCTTATCTTGAGCTAGCATTCGAGTGAGGCTTTTCTTTTTGCAGGGGCGTGTTGCATAAATGGTCCGGCTACTG
TTACATTCATATCTCATGGTCTGGTTCCTCTTNNNTCTTTCTTTTTNTTTTGTTTCTTTTGTCAAGGCCTTCCTATGCTA
GTCAATGTGTGAAAAGAGATAGTAGTAGTGATGAGTCCATTCTATGGTTTCTTGTTTTGGAATTGTAAGTGTGCTCTTTG
GTTTGAGACTTCGAGTAAGTACAGGATTCATGGTGTGGTTAAGTCAATAAGTGGCTTACTGATTTCCCTACATTTTGTCT
TTAGCTGCTTCCTTGTGTGTTGGGACAGCAAGAAACAACTATCCAGTGACAAACTGACACCTCTATTTTTTCCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis