Browse Element(s) Details


Os.4940.1.S1_at

Description gb:AK103599.1
DB_XREF= gi:32988808
TID=Os.4940.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4940 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133F14, full insert sequence.
FL= gb:AK103599.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4697011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46900Os.11106.1.S1_at11/116+28462800..28465239phosphosulfolactate synthase-related protein, putative, expressed
LOC_Os06g46910Os.50189.1.S1_at11/116+28466986..28470156zinc finger family protein, putative, expressed
LOC_Os06g46910Os.50189.2.S1_at11/116+28466986..28470156zinc finger family protein, putative, expressed
LOC_Os06g46920Os.52555.1.S1_at11/116+28469176..28471150NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g46930Os.7589.1.S1_at11/116+28471589..2847378150S ribosomal protein L24, chloroplast precursor, putative, expressed
LOC_Os06g46940Os.49601.1.S1_at9/116+28476209..28479889Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os06g46950Os.7902.1.S1_at11/116+28482814..28483492EF-hand Ca2+-binding protein CCD1, putative, expressed
LOC_Os06g46960NANA6+28486836..28487644RNase H domain-containing protein, putative
LOC_Os06g46970Os.4940.1.S1_at11/116+28489033..28489686expressed protein
LOC_Os06g46980Os.56964.1.S1_at11/116+28492189..28492849expressed protein
LOC_Os06g46990Os.51830.1.S1_at11/116+28494282..28496333expressed protein
LOC_Os06g47000Os.28370.1.A1_s_at11/116+28503187..28507810EF hand family protein, expressed
LOC_Os06g47000Os.49375.1.S1_at11/116+28503187..28507810EF hand family protein, expressed
LOC_Os06g47010NANA6+28512372..28512962retrotransposon protein, putative, unclassified
LOC_Os06g47020OsAffx.15960.1.S1_at11/116+28513438..28514082ZmEBE-2 protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4940.1.S1_at--1074--2931Chr06:28489599..28489623 (25 bp)
AAGGCGTCTGCGTGCGAGGAAATCA
LOC_Os06g46970
Os.4940.1.S1_at--393--5591Chr06:28489581..28489605 (25 bp)
GAAATCATCCGGTTTTTCAAGCTAA
LOC_Os06g46970
Os.4940.1.S1_at--952--3991Chr06:28489539..28489563 (25 bp)
CGTCGTCGTTGAGCAAGAAGGCGTC
LOC_Os06g46970
Os.4940.1.S1_at--291--6332Chr06:28489277..28489301 (25 bp)
GATGCAGAAGGCGTATCACCTCGTC
LOC_Os06g46970
Os.4940.1.S1_at--130--6731Chr06:28489229..28489253 (25 bp)
GTTCTTCAAATTCGTGATTTCGTGT
LOC_Os06g46970
Os.4940.1.S1_at--1088--10271Chr06:28489196..28489220 (25 bp)
TTTCGTTTGCAATTTGTCCACCCCT
LOC_Os06g46970
Os.4940.1.S1_at--35--1811Chr06:28489177..28489201 (25 bp)
ACCCCTCATTTTCTGGTGTGTAAAT
LOC_Os06g46970
Os.4940.1.S1_at--525--2271Chr06:28489156..28489180 (25 bp)
AAATCGAGCCAATACCTGCAGGGAT
LOC_Os06g46970
Os.4940.1.S1_at--922--8832Chr06:28489121..28489145 (25 bp)
TGATCCGTTTTCATGTACTACTACT
LOC_Os06g46970
Os.4940.1.S1_at--890--2011Chr06:28489102..28489126 (25 bp)
ACTACTTCCCCATCTGATTCTGATG
LOC_Os06g46970
Os.4940.1.S1_at--495--10691Chr06:28489072..28489096 (25 bp)
TTGCTATGTGCAAACTACGGAGTAA
LOC_Os06g46970
Target Sequence 
AAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGTGAAGATGAGCTCGTCGTCGTTGAGCAAGAAG
GCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGCTCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTA
CGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGNCGCCAAGCAGGTCACCGGCCGCGCCGTCCCGGTGTCGCTGTCGTCGC
AGACCGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAG
AAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAG
TTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTG
ATCCGTTTTCATGTACTACTACTTCCCCATCTGATTCTGATGGAGAATTGCTATGTGCAAACTACGGAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis