Browse Element(s) Details


OsAffx.15960.1.S1_at

Description tigr:9634.m04579
TID=OsAffx.15960.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DD1B protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4702011/11ZmEBE-2 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46970Os.4940.1.S1_at11/116+28489033..28489686expressed protein
LOC_Os06g46980Os.56964.1.S1_at11/116+28492189..28492849expressed protein
LOC_Os06g46990Os.51830.1.S1_at11/116+28494282..28496333expressed protein
LOC_Os06g47000Os.28370.1.A1_s_at11/116+28503187..28507810EF hand family protein, expressed
LOC_Os06g47000Os.49375.1.S1_at11/116+28503187..28507810EF hand family protein, expressed
LOC_Os06g47010NANA6+28512372..28512962retrotransposon protein, putative, unclassified
LOC_Os06g47020OsAffx.15960.1.S1_at11/116+28513438..28514082ZmEBE-2 protein, putative
LOC_Os06g47030OsAffx.15961.1.S1_at11/116+28522996..28523217hypothetical protein
LOC_Os06g47040Os.53923.1.S1_at11/116+28523561..28524827expressed protein
LOC_Os06g47050OsAffx.28143.1.S1_at10/116+28525553..28528215hypothetical protein
LOC_Os06g47060OsAffx.15962.1.S1_at11/116+28530612..28532532hypothetical protein
LOC_Os06g47060OsAffx.19489.2.S1_at2/116+28530612..28532532hypothetical protein
LOC_Os06g47060OsAffx.19489.2.S1_x_at1/116+28530612..28532532hypothetical protein
LOC_Os06g47070OsAffx.30013.1.S1_x_at2/116+28537704..28538273hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15960.1.S1_at--323--7331Chr06:28513469..28513493 (25 bp)
GTGCATCTATACAACCAGGCGACTT
LOC_Os06g47020
OsAffx.15960.1.S1_at--303--7591Chr06:28513520..28513544 (25 bp)
GGGCTAGGCAATACATGGCACTCAA
LOC_Os06g47020
OsAffx.15960.1.S1_at--1048--8971Chr06:28513692..28513716 (25 bp)
TGAACTAATTGGTCGTCTCCCCAAA
LOC_Os06g47020
OsAffx.15960.1.S1_at--346--2251Chr06:28513714..28513738 (25 bp)
AAATCAATCTTCTCAGGCCTGGCTT
LOC_Os06g47020
OsAffx.15960.1.S1_at--66--931Chr06:28513742..28513766 (25 bp)
AGGCTATAGCCTTATGGTTCAGTGG
LOC_Os06g47020
OsAffx.15960.1.S1_at--559--351Chr06:28513778..28513802 (25 bp)
ATAATGCAACGTTTCAGCCGACACC
LOC_Os06g47020
OsAffx.15960.1.S1_at--1154--8251Chr06:28513854..28513878 (25 bp)
GGCAGCATCCATGAGCAACATTCAA
LOC_Os06g47020
OsAffx.15960.1.S1_at--805--10171Chr06:28513923..28513947 (25 bp)
TATAGGTTTCTCATCCAACCCGAAG
LOC_Os06g47020
OsAffx.15960.1.S1_at--817--5391Chr06:28513944..28513968 (25 bp)
GAAGCTCTACTCTTACACGGCGATT
LOC_Os06g47020
OsAffx.15960.1.S1_at--855--4611Chr06:28513963..28513987 (25 bp)
GCGATTGTTGACGACCAGTTTTTCT
LOC_Os06g47020
OsAffx.15960.1.S1_at--583--951Chr06:28514002..28514026 (25 bp)
AGGACAACAAGCTCGGATGCCACAT
LOC_Os06g47020
Target Sequence 
GTGCATCTATACAACCAGGCGACTTTATCCCCAGTGTCTCCAGGCCAAATGGGGCTAGGCAATACATGGCACTCAAAGTA
TTCAAGGATAGTGCTTCAGGGGATTGGTTGGTGTACTACGGGTTCAATAGTGACCCTGAACTAATTGGTCGTCTCCCCAA
ATCAATCTTCTCAGGCCTGGCTTACAAGGCTATAGCCTTATGGTTCAGTGGCATGGCGATTAATAATGCAACGTTTCAGC
CGACACCCGCTCTGCCTCCGGTGGGCAGCGGATACATGGCAGGTCATGGCAGCAACATGGCAGCATCCATGAGCAACATT
CAACTCATCGACGAGCAGGGGCAAGCGTTGTCAACGGCGAGACATTTTATAGGTTTCTCATCCAACCCGAAGCTCTACTC
TTACACGGCGATTGTTGACGACCAGTTTTTCTATGGTGGTCCCGGAAGGACAACAAGCTCGGATGCCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis