Browse Element(s) Details


OsAffx.19489.2.S1_x_at

Description tigr:9629.m07140
TID=OsAffx.19489.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g015502/11F-box domain containing protein, expressed
LOC_Os06g470601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01500Os.51720.1.S1_at11/112+287571..293885pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os02g01510Os.10215.1.S1_at11/112+295331..299167L-lactate dehydrogenase A, putative, expressed
LOC_Os02g01510OsAffx.28164.2.S1_at2/112+295331..299167L-lactate dehydrogenase A, putative, expressed
LOC_Os02g01520Os.50278.1.S1_at10/112+300074..302819IQ calmodulin-binding motif family protein, expressed
LOC_Os02g01530Os.49728.1.S1_at4/112+304089..304849hypothetical protein
LOC_Os02g01540Os.6938.1.A1_at11/112+307058..310927ribosomal protein S11 containing protein
LOC_Os02g01540OsAffx.11860.1.S1_at11/112+307058..310927ribosomal protein S11 containing protein
LOC_Os02g01550Os.49728.1.S1_at11/112+311537..316458F-box domain containing protein, expressed
LOC_Os02g01550OsAffx.19489.2.S1_x_at2/112+311537..316458F-box domain containing protein, expressed
LOC_Os02g01560Os.12238.2.S1_x_at11/112+316594..31912840S ribosomal protein S4, putative, expressed
LOC_Os02g01560Os.12238.1.S1_at11/112+316594..31912840S ribosomal protein S4, putative, expressed
LOC_Os02g01570NANA2+321074..327184retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01580NANA2+327500..330456retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19489.2.S1_x_at--419--9532Chr06:28531010..28531034 (25 bp)
TCTCACTCTTCTCTCCTGTTGCAAG
LOC_Os06g47060
OsAffx.19489.2.S1_x_at--1011--9491Chr01:42182970..42182994 (25 bp)
TCTCCTGTTGCAAGCCGACCGGCAG
NONE
OsAffx.19489.2.S1_x_at--636--5831Chr01:42182954..42182978 (25 bp)
GACCGGCAGCGAACACGGTGGCACC
NONE
OsAffx.19489.2.S1_x_at--801--1031Chr01:42182866..42182890 (25 bp)
AGGTCGTGGCGCTGTCGTCATCATC
NONE
OsAffx.19489.2.S1_x_at--191--7191Chr01:42182864..42182888 (25 bp)
GTCGTGGCGCTGTCGTCATCATCGT
NONE
OsAffx.19489.2.S1_x_at--106--4511Chr01:42182752..42182804 (25 bp)
GCCGCGGCTGGTGCGTTTTTGTACA
NONE
OsAffx.19489.2.S1_x_at--217--4691Chr01:42182749..42182801 (25 bp)
GCGGCTGGTGCGTTTTTGTACAGCA
NONE
OsAffx.19489.2.S1_x_at--1063--3891Chr01:42182745..42182779 (25 bp)
CTGGTGCGTTTTTGTACAGCAGGCA
NONE
OsAffx.19489.2.S1_x_at--178--4552Chr02:314816..314836 (21 bp)
GCCCTGCTGGTTCAGCTGCAGATAA
LOC_Os02g01550
OsAffx.19489.2.S1_x_at--126--4732Chr02:314816..314835 (20 bp)
GCTGGTTCAGCTGCAGATAATCAAA
LOC_Os02g01550
OsAffx.19489.2.S1_x_at--702--6451Chr01:42182508..42182532 (25 bp)
GATAATCAAAATTCTTCTTCCATCC
NONE
Target Sequence 
TCTCACTCTTCTCTCCTGTTGCAAGCCGACCGGCAGCGAACACGGTGGCACCGGTGGTGCTGCAGGGGGCACACGGCGGA
GGTGGGCGGCGCTGGTGCCGAGGAGGAGGAGGAGGAGGTCGTGGCGCTGTCGTCATCATCGTCCTCGGCGCCGGGGAAGA
AGGTGGGCGCGGCGGCGGCGGCGGCGGAGGCTAGGGGGTTTGCCGCGGCTGGTGCGTTTTTGTACAGCAGGCAGGCGTCG
GTGGCGGCGCCCAAGAGCGGGCAGCTCCCGGGGTGCGGCGCCCGGGGTTGCTGGCACATGCGGTGCGGCGCTGCCGTCGA
CCTCGCCCTCGACACGCTCGCCGCCGCGCGCTCCTTCGGCGTCGAGCAGCTCGCCCTGCTGGTTCAGCTGCAGATAATCA
AAATTCTTCTTCCATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19489.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis