Browse Element(s) Details


Os.6938.1.A1_at

Description gb:CR291564
DB_XREF= gi:44678130
DB_XREF=CR291564
CLONE=y801h02p3
TID=Os.6938.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6938 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0154011/11ribosomal protein S11 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01490NANA2+279583..285795expressed protein
LOC_Os02g01500Os.51720.1.S1_at11/112+287571..293885pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os02g01510Os.10215.1.S1_at11/112+295331..299167L-lactate dehydrogenase A, putative, expressed
LOC_Os02g01510OsAffx.28164.2.S1_at2/112+295331..299167L-lactate dehydrogenase A, putative, expressed
LOC_Os02g01520Os.50278.1.S1_at10/112+300074..302819IQ calmodulin-binding motif family protein, expressed
LOC_Os02g01530Os.49728.1.S1_at4/112+304089..304849hypothetical protein
LOC_Os02g01540Os.6938.1.A1_at11/112+307058..310927ribosomal protein S11 containing protein
LOC_Os02g01540OsAffx.11860.1.S1_at11/112+307058..310927ribosomal protein S11 containing protein
LOC_Os02g01550Os.49728.1.S1_at11/112+311537..316458F-box domain containing protein, expressed
LOC_Os02g01550OsAffx.19489.2.S1_x_at2/112+311537..316458F-box domain containing protein, expressed
LOC_Os02g01560Os.12238.2.S1_x_at11/112+316594..31912840S ribosomal protein S4, putative, expressed
LOC_Os02g01560Os.12238.1.S1_at11/112+316594..31912840S ribosomal protein S4, putative, expressed
LOC_Os02g01570NANA2+321074..327184retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01580NANA2+327500..330456retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6938.1.A1_at--573--2791Chr02:307542..307566 (25 bp)
AAGATGACCCGGTTCCATGAAGGCA
LOC_Os02g01540
Os.6938.1.A1_at--612--2331Chr02:307572..307596 (25 bp)
AAAGTTCATGTGAGGAGGTCCCGAT
LOC_Os02g01540
Os.6938.1.A1_at--899--951Chr02:307584..307608 (25 bp)
AGGAGGTCCCGATCGTACCTAGTTG
LOC_Os02g01540
Os.6938.1.A1_at--444--9391Chr02:307596..307620 (25 bp)
TCGTACCTAGTTGTTCATCTGATCT
LOC_Os02g01540
Os.6938.1.A1_at--595--6731Chr02:307608..307632 (25 bp)
GTTCATCTGATCTGATGGTAGTTAC
LOC_Os02g01540
Os.6938.1.A1_at--688--3431Chr02:307632..307656 (25 bp)
CAGTAGCAGTAGTAGTCAAGTAGTC
LOC_Os02g01540
Os.6938.1.A1_at--143--7091Chr02:307646..307670 (25 bp)
GTCAAGTAGTCGAATCAGCATGTTA
LOC_Os02g01540
Os.6938.1.A1_at--1020--391Chr02:307659..307683 (25 bp)
ATCAGCATGTTAATCCTGTTTGAAG
LOC_Os02g01540
Os.6938.1.A1_at--820--6951Chr02:307690..307714 (25 bp)
GTAGCAGCGAGTAATGTCACTAGTA
LOC_Os02g01540
Os.6938.1.A1_at--1066--7091Chr02:307705..307729 (25 bp)
GTCACTAGTAGTACAGCACAGCACA
LOC_Os02g01540
Os.6938.1.A1_at--197--3291Chr02:307734..307758 (25 bp)
CACAAGTATATGAGGATGTACCCGC
LOC_Os02g01540
Target Sequence 
AAGATGACCCGGTTCCATGAAGGCAAGCGGAAAGTTCATGTGAGGAGGTCCCGATCGTACCTAGTTGTTCATCTGATCTG
ATGGTAGTTACAGTAGCAGTAGTAGTCAAGTAGTCGAATCAGCATGTTAATCCTGTTTGAAGGAGCAAGTAGCAGCGAGT
AATGTCACTAGTAGTACAGCACAGCACAGCAACACAAGTATATGAGGATGTACCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6938.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis