Browse Element(s) Details


Os.50278.1.S1_at

Description gb:AK063929.1
DB_XREF= gi:32973947
TID=Os.50278.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C12, full insert sequence.
FL= gb:AK102953.1 gb:AK063929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0152010/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01480Os.50997.1.A1_x_at11/112+274455..277257expressed protein
LOC_Os02g01480Os.54334.1.S1_at10/112+274455..277257expressed protein
LOC_Os02g01490NANA2+279583..285795expressed protein
LOC_Os02g01500Os.51720.1.S1_at11/112+287571..293885pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os02g01510Os.10215.1.S1_at11/112+295331..299167L-lactate dehydrogenase A, putative, expressed
LOC_Os02g01510OsAffx.28164.2.S1_at2/112+295331..299167L-lactate dehydrogenase A, putative, expressed
LOC_Os02g01520Os.50278.1.S1_at10/112+300074..302819IQ calmodulin-binding motif family protein, expressed
LOC_Os02g01530Os.49728.1.S1_at4/112+304089..304849hypothetical protein
LOC_Os02g01540Os.6938.1.A1_at11/112+307058..310927ribosomal protein S11 containing protein
LOC_Os02g01540OsAffx.11860.1.S1_at11/112+307058..310927ribosomal protein S11 containing protein
LOC_Os02g01550Os.49728.1.S1_at11/112+311537..316458F-box domain containing protein, expressed
LOC_Os02g01550OsAffx.19489.2.S1_x_at2/112+311537..316458F-box domain containing protein, expressed
LOC_Os02g01560Os.12238.2.S1_x_at11/112+316594..31912840S ribosomal protein S4, putative, expressed
LOC_Os02g01560Os.12238.1.S1_at11/112+316594..31912840S ribosomal protein S4, putative, expressed
LOC_Os02g01570NANA2+321074..327184retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01580NANA2+327500..330456retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50278.1.S1_at--565--8131Chr02:301602..301626 (25 bp)
GGACATTAGGTCCTTGTTCTACAAC
LOC_Os02g01520
Os.50278.1.S1_at--148--3631Chr02:301614..301638 (25 bp)
CTTGTTCTACAACATCTCTTACCGC
LOC_Os02g01520
Os.50278.1.S1_at--953--2771Chr02:301661..301685 (25 bp)
AAGAGCGTCAGAGGTTTGCCGACAA
LOC_Os02g01520
Os.50278.1.S1_at--1044--9151NONE
TGCCCTTGAGGGACCAGACTATATG
NONE
Os.50278.1.S1_at--1020--6031Chr02:302410..302434 (25 bp)
GAGATCGTAGGTCCTCAGTCACTAG
LOC_Os02g01520
Os.50278.1.S1_at--802--8911Chr02:302450..302474 (25 bp)
TGAGCCGCAGAAAGTTTGAGAACCA
LOC_Os02g01520
Os.50278.1.S1_at--112--7611Chr02:302503..302527 (25 bp)
GGGCAAGTGAAAGGCACCATCGGTT
LOC_Os02g01520
Os.50278.1.S1_at--373--4031Chr02:302534..302558 (25 bp)
CGTAGTGCGGCGTATGAAGATGCTT
LOC_Os02g01520
Os.50278.1.S1_at--1055--8811Chr02:302604..302628 (25 bp)
TGTTGTGTCTGTAACTCTAGTTGTA
LOC_Os02g01520
Os.50278.1.S1_at--17--5931Chr02:302678..302702 (25 bp)
GAGCTTCTTTATAACCTCTTGTTGT
LOC_Os02g01520
Os.50278.1.S1_at--588--3511Chr02:302741..302765 (25 bp)
CATGAAATGATGTGCGGCATGTGCC
LOC_Os02g01520
Target Sequence 
GGACATTAGGTCCTTGTTCTACAACATCTCTTACCGCCGCCGCATTTCGCATGACTNTGAAGAGCGTCAGAGGTTTGCCG
ACAAAATCATTGCCCTGNTCGCCACTGTTGATGCCCTTGAGGGACCAGACTATATGGTTNGCAATGCAAAGAGGTNTATG
CTGGAGGAGCTGGAGGGGATGNTAGAGATCGTAGGTCCTCAGTCACTAGGGAAGCCAAGGACTNTGAGCCGCAGAAAGTT
TGAGAACCATATNTAATGATATGAGGNCTGGTGTCAAGGGCAAGTGAAAGGCACCATCGGTTNTATTTCGTAGTGCGGCG
TATGAAGATGCTTGATGGGGGACCTACCTTTNTGAATGTGTTTACGGTTTAGACAGAATGTTGTGTCTGTAACTCTAGTT
GTATGATNTATNTTCTGCTTGAANTAGTACTTATGTGTTGCTAGANTAGTTAGAGCTTCTTTATAACCTCTTGTTGTTNG
AGGAAGCTTCTTGTAGAAACTGTTTCATAATTTGTCATGAAATGATGTGCGGCATGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis