Browse Element(s) Details


Os.54334.1.S1_at

Description gb:AK103456.1
DB_XREF= gi:32988665
TID=Os.54334.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129K17, full insert sequence.
FL= gb:AK103456.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0148010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01420Os.47463.1.S1_x_at6/112+249876..253000transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g01420Os.14491.2.S1_x_at5/112+249876..253000transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g01430NANA2+255592..258924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g01440Os.27378.1.A1_at5/112+261348..265160GTP-binding protein, putative, expressed
LOC_Os02g01440Os.50281.1.S1_at1/112+261348..265160GTP-binding protein, putative, expressed
LOC_Os02g01450Os.53110.1.S1_at11/112+265795..268839expressed protein
LOC_Os02g01460NANA2+269817..271352retrotransposon protein, putative, unclassified
LOC_Os02g01470NANA2+271926..273503retrotransposon protein, putative, unclassified
LOC_Os02g01480Os.50997.1.A1_x_at11/112+274455..277257expressed protein
LOC_Os02g01480Os.54334.1.S1_at10/112+274455..277257expressed protein
LOC_Os02g01490NANA2+279583..285795expressed protein
LOC_Os02g01500Os.51720.1.S1_at11/112+287571..293885pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os02g01510Os.10215.1.S1_at11/112+295331..299167L-lactate dehydrogenase A, putative, expressed
LOC_Os02g01510OsAffx.28164.2.S1_at2/112+295331..299167L-lactate dehydrogenase A, putative, expressed
LOC_Os02g01520Os.50278.1.S1_at10/112+300074..302819IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54334.1.S1_at--880--8591Chr02:276606..276630 (25 bp)
TGGTGTAAGCCAACTTTCTTTTCAG
LOC_Os02g01480
Os.54334.1.S1_at--516--7611Chr02:276651..276675 (25 bp)
GGGAATTAATGCATTGAGTCATACA
LOC_Os02g01480
Os.54334.1.S1_at--595--7131Chr02:276668..276692 (25 bp)
GTCATACATAGTACCTGGAAAGGCA
LOC_Os02g01480
Os.54334.1.S1_at--54--9971Chr02:276679..276703 (25 bp)
TACCTGGAAAGGCAAATTCTGCAAT
LOC_Os02g01480
Os.54334.1.S1_at--826--8211Chr02:276709..276733 (25 bp)
GGAATTTTGTATATCCTGCCATATT
LOC_Os02g01480
Os.54334.1.S1_at--138--10151Chr02:276720..276744 (25 bp)
TATCCTGCCATATTATTGAACTTAG
LOC_Os02g01480
Os.54334.1.S1_at--778--10511Chr02:276735..276759 (25 bp)
TTGAACTTAGTATTCTTACCAATTT
LOC_Os02g01480
Os.54334.1.S1_at--667--331Chr02:276769..276793 (25 bp)
ATACTTCTCTGTAGGATTATTTTCC
LOC_Os02g01480
Os.54334.1.S1_at--565--191Chr02:277220..277244 (25 bp)
ATTTCTCTTCGTGAAAAGTCCACCT
LOC_Os02g01480
Os.54334.1.S1_at--975--9371Chr02:277228..277252 (25 bp)
TCGTGAAAAGTCCACCTTTCTTTTG
LOC_Os02g01480
Os.54334.1.S1_at--946--10731Chr02:277265..277289 (25 bp)
TTGAAACATCATGTTCTGTTGGTAT
NONE
Target Sequence 
TGGTGTAAGCCAACTTTCTTTTCAGAAAAAGAAAAACAGAAACAGGGGAATTAATGCATTGAGTCATACATAGTACCTGG
AAAGGCAAATTCTGCAATAATTTGGAATTTTGTATATCCTGCCATATTATTGAACTTAGTATTCTTACCAATTTGTGGAG
AAAATACTTCTCTGTAGGATTATTTTCCATCTGAGTCGATGAATGCAACAGTAAACCTAGTCAGGGAGAAGCTTGATAAG
ATACAATCCAGCAGCGACAATTCCAGTGCTATAGTTGCACCCAAGAAACCAAGGACCGATAACCGTAGACGAATTTGATA
TCATGGGATGGAGTAGAACATGCATTTTTTTTTCTTCATCTACTTTCTTGTAGTTTGTTTTATAATTGGCAGAAAATAGT
GTACTATAATGCTAAATGCTGTCTATATTCTCCCTCAGTTGTAAAAGTATCCCCTTTTAGGTTTTCTGCGGAAGTAACGT
TAGTATCATGTTTTGACGTGGATTAATGTCATGTTTGATGAGCACATTTCTCTTCGTGAAAAGTCCACCTTTCTTTTGAA
CAATTTATATTTGAAACATCATGTTCTGTTGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis