Browse Element(s) Details


Os.27378.1.A1_at

Description gb:CB635975
DB_XREF= gi:29630966
DB_XREF=OSIIEb16P04.r
CLONE=OSIIEb16P04
TID=Os.27378.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27378 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T13000 (A.thaliana) T13000 hypothetical protein T21L8.200 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g014405/11GTP-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01390OsAffx.22492.1.S1_x_at1/112+230669..236824retrotransposon protein, putative, unclassified
LOC_Os02g01390OsAffx.22492.1.S1_at1/112+230669..236824retrotransposon protein, putative, unclassified
LOC_Os02g01400Os.31312.5.S1_x_at3/112+237453..240670retrotransposon protein, putative, unclassified
LOC_Os02g01400Os.31312.2.S1_x_at2/112+237453..240670retrotransposon protein, putative, unclassified
LOC_Os02g01410OsAffx.24049.1.S1_at10/112+247646..248321hypothetical protein
LOC_Os02g01420Os.47463.1.S1_x_at6/112+249876..253000transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g01420Os.14491.2.S1_x_at5/112+249876..253000transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g01430NANA2+255592..258924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g01440Os.27378.1.A1_at5/112+261348..265160GTP-binding protein, putative, expressed
LOC_Os02g01440Os.50281.1.S1_at1/112+261348..265160GTP-binding protein, putative, expressed
LOC_Os02g01450Os.53110.1.S1_at11/112+265795..268839expressed protein
LOC_Os02g01460NANA2+269817..271352retrotransposon protein, putative, unclassified
LOC_Os02g01470NANA2+271926..273503retrotransposon protein, putative, unclassified
LOC_Os02g01480Os.50997.1.A1_x_at11/112+274455..277257expressed protein
LOC_Os02g01480Os.54334.1.S1_at10/112+274455..277257expressed protein
LOC_Os02g01490NANA2+279583..285795expressed protein
LOC_Os02g01500Os.51720.1.S1_at11/112+287571..293885pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006809biological_processnitric oxide biosynthesis
GO:0004517molecular_functionnitric-oxide synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27378.1.A1_at--963--9471Chr02:264706..264918 (25 bp)
TCTGATAGACCTGCTTGTGACATTG
LOC_Os02g01440
Os.27378.1.A1_at--888--8691Chr02:264959..264983 (25 bp)
TGTGCCATCAAGCAACCCAGATGAG
LOC_Os02g01440
Os.27378.1.A1_at--1108--9871Chr02:265030..265054 (25 bp)
TACATGTTCCCAAGCCTGTTGAGAT
LOC_Os02g01440
Os.27378.1.A1_at--715--8811Chr02:265046..265070 (25 bp)
TGTTGAGATCTTTGTCCGACCTCCA
LOC_Os02g01440
Os.27378.1.A1_at--1048--4191Chr02:265061..265085 (25 bp)
CCGACCTCCATTGCCTGTTGGTAAA
LOC_Os02g01440
Os.27378.1.A1_at--229--6311Chr02:265183..265207 (25 bp)
GATGACAGCATCGTGTAGTCCAAAT
NONE
Os.27378.1.A1_at--686--10631Chr02:265336..265360 (25 bp)
TTGCGGGTACTCTCTGTTTCTAAGA
NONE
Os.27378.1.A1_at--324--6831Chr02:265351..265375 (25 bp)
GTTTCTAAGATCTTCGTCCTAGCAC
NONE
Os.27378.1.A1_at--941--7251NONE
GTCCTAGCACATATACGGTCACATC
NONE
Os.27378.1.A1_at--1084--10351Chr02:265392..265416 (25 bp)
TTTTTCCTTTGCAACACTATGTGTG
NONE
Os.27378.1.A1_at--144--3711Chr02:265408..265432 (25 bp)
CTATGTGTGACGCACTGACGCTTAA
NONE
Target Sequence 
TCTGATAGACCTGCTTGTGACATTGCAATTTNTGGTCTCGGGTGGGTTGCGGTTGAGCCACNTGGTGTGCCATCAAGCAA
CCCAGATGAGAGTGNTGAGGAAGAAGACAATGNGAGTGGTGAACTGCATTTGAGAGTACATGTTCCCAAGCCTGTTGAGA
TCTTTGTCCGACCTCCATTGCCTGTTGGTAAAGNCAGCATCGNCAATGGTACAGATNCNCAGGAGTTGACCGAGGAAGAA
GAGGAGTTGAGNCCTAAATGGCATTACTGATGCNTATAGCTATTTTAGTTNCGATGACAGCATCGTGTAGTCCAAATNGA
GCACGTAATTATATATGTTCTCAGATNGATGTGATAGGGATGACAGTTTTAGCATCAGCTGATTAAAATTACTCCAATAA
TGATTCAGGAAGGAATTTTGGATAAAGACATCGACAAGTGAAGCTCTTGCGGGTACTCTCTGTTTCTAAGATCTTCGTCC
TAGCACATATACGGTCACATCATTTTTCCTTTGCAACACTATGTGTGACGCACTGACGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27378.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis