Browse Element(s) Details

Os.55380.1.S1_at

Description

gb:AK107980.1
DB_XREF= gi:32993189
TID=Os.55380.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55380 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-E05, full insert sequence.
FL= gb:AK107980.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g46740	11/11	Plastocyanin-like domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g46690	Os.24341.1.A1_at	4/11	6	+	28362871..28367050	Exostosin family protein, expressed
LOC_Os06g46690	Os.5303.1.S2_at	2/11	6	+	28362871..28367050	Exostosin family protein, expressed
LOC_Os06g46700	Os.5303.1.S1_at	4/11	6	+	28367889..28370714	expressed protein
LOC_Os06g46710	NA	NA	6	+	28372190..28375724	retrotransposon protein, putative, unclassified
LOC_Os06g46720	Os.51429.1.S1_at	11/11	6	+	28376095..28381491	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g46730	OsAffx.28138.1.S1_at	11/11	6	+	28382667..28384807	hypothetical protein
LOC_Os06g46740	Os.55380.1.S1_at	11/11	6	+	28387377..28388576	Plastocyanin-like domain containing protein, expressed
LOC_Os06g46754	Os.50821.1.S1_at	10/11	6	+	28389335..28395009	p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754	Os.57130.1.S1_at	10/11	6	+	28389335..28395009	p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754	OsAffx.28139.1.S1_at	3/11	6	+	28389335..28395009	p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46770	Os.10139.1.S1_s_at	11/11	6	+	28400733..28403579	polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46770	Os.57479.1.S1_x_at	3/11	6	+	28400733..28403579	polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46770	Os.25748.1.S1_x_at	1/11	6	+	28400733..28403579	polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os06g46780	OsAffx.15958.1.S1_at	9/11	6	+	28405288..28406220	Protease inhibitor/seed storage/LTP family protein
LOC_Os06g46799	Os.53303.1.S1_at	11/11	6	+	28413036..28424516	Peroxidase 3 precursor, putative, expressed
LOC_Os06g46799	Os.5843.1.S1_at	11/11	6	+	28413036..28424516	Peroxidase 3 precursor, putative, expressed
LOC_Os06g46799	Os.23700.1.A1_at	1/11	6	+	28413036..28424516	Peroxidase 3 precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006118	biological_process	electron transport
GO:0031225	cellular_component	anchored to membrane
GO:0005489	molecular_function	electron transporter activity
GO:0005507	molecular_function	copper ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.55380.1.S1_at--405--155	1	Chr06:28387844..28387868 (25 bp)	AGCTTGGCGCCGTCTCCGGTAGCTA	LOC_Os06g46740
Os.55380.1.S1_at--1095--53	1	Chr06:28387806..28387830 (25 bp)	ATCGCCGTCGGTTTCACCTATGGCG	LOC_Os06g46740
Os.55380.1.S1_at--776--695	1	Chr06:28387713..28387737 (25 bp)	GTCAACTACCCCTGGAGGCGTGGCC	LOC_Os06g46740
Os.55380.1.S1_at--672--941	1	Chr06:28387579..28387603 (25 bp)	TCGTCGTCACGTCGCTGGGAGCATA	LOC_Os06g46740
Os.55380.1.S1_at--60--865	1	Chr06:28387564..28387588 (25 bp)	TGGGAGCATACATCGGCTACGCCAT	LOC_Os06g46740
Os.55380.1.S1_at--228--831	1	Chr06:28387550..28387574 (25 bp)	GGCTACGCCATGCTAGCTATCTGAA	LOC_Os06g46740
Os.55380.1.S1_at--1131--485	1	Chr06:28387539..28387563 (25 bp)	GCTAGCTATCTGAAGCTTTCTGCTT	LOC_Os06g46740
Os.55380.1.S1_at--311--271	1	Chr06:28387527..28387551 (25 bp)	AAGCTTTCTGCTTCTGCAGTGACGT	LOC_Os06g46740
Os.55380.1.S1_at--28--347	1	Chr06:28387511..28387535 (25 bp)	CAGTGACGTGTTCTTTTATTTGTGC	LOC_Os06g46740
Os.55380.1.S1_at--379--5	1	Chr06:28387456..28387480 (25 bp)	ATTGTTACAGATACCGTAGAGACTA	LOC_Os06g46740
Os.55380.1.S1_at--705--951	1	Chr06:28387421..28387445 (25 bp)	TCTCTGGATTTGTTTTTGCATTGGT	LOC_Os06g46740

Target Sequence

AGCTTGGCGCCGTCTCCGGTAGCTACGNCGCCGAGCCCATCGCCGTCGGTTTCACCTATGGCGCCGGCGCCTGCTCCGAC
GACGTCAACACCGAGCTCGCCACCGGCGCCAGCGGCCATGGCACCGTCGCCGTCAACTACCCCTGGAGGCGTGGCCCAGC
CGCCGCCGCCGCCGGGGACCGATGGGGCGAACGCGACGACGCCGGCGGCGCCCGCAGCCAACGACCGGAGTGGCGCCGCC
GCCGCTGCTCCGGTGGTGGCCGGCGTCGTCGTCACGTCGCTGGGAGCATACATCGGCTACGCCATGCTAGCTATCTGAAG
CTTTCTGCTTCTGCAGTGACGTGTTCTTTTATTTGTGCAGTGTAAAGTTAAATGAAATCGAGTGGTATATTGTTACAGAT
ACCGTAGAGACTAGAGAGGATTATCTCTGGATTTGTTTTTGCATTGGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis