Browse Element(s) Details


Os.5303.1.S2_at

Description gb:AK121510.1
DB_XREF= gi:37991133
TID=Os.5303.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5303 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033081L11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023L23, full insert sequence.
FL= gb:AK121510.1 gb:AK121723.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g466902/11Exostosin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46659NANA6+28338761..28339010NA
LOC_Os06g46670Os.27451.1.S1_at11/116+28344395..28350244Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os06g46680Os.49708.1.S1_at11/116+28354129..28357367cytochrome P450, putative, expressed
LOC_Os06g46690Os.24341.1.A1_at4/116+28362871..28367050Exostosin family protein, expressed
LOC_Os06g46690Os.5303.1.S2_at2/116+28362871..28367050Exostosin family protein, expressed
LOC_Os06g46700Os.5303.1.S1_at4/116+28367889..28370714expressed protein
LOC_Os06g46710NANA6+28372190..28375724retrotransposon protein, putative, unclassified
LOC_Os06g46720Os.51429.1.S1_at11/116+28376095..28381491retrotransposon protein, putative, unclassified, expressed
LOC_Os06g46730OsAffx.28138.1.S1_at11/116+28382667..28384807hypothetical protein
LOC_Os06g46740Os.55380.1.S1_at11/116+28387377..28388576Plastocyanin-like domain containing protein, expressed
LOC_Os06g46754Os.50821.1.S1_at10/116+28389335..28395009p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754Os.57130.1.S1_at10/116+28389335..28395009p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754OsAffx.28139.1.S1_at3/116+28389335..28395009p21-rho-binding domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5303.1.S2_at--642--4711Chr06:28363075..28363099 (25 bp)
GCTGGACTGGGCACGGTTCTCCGTC
LOC_Os06g46690
Os.5303.1.S2_at--796--7891Chr06:28362917..28362941 (25 bp)
GGTTCGACGTGGTCAACATGGTCAT
LOC_Os06g46690
Os.5303.1.S2_at--566--1671Chr06:28362861..28362885 (25 bp)
AGCCTCCCCTACTGAATTACAGAAT
NONE
Os.5303.1.S2_at--999--2731Chr06:28362825..28362849 (25 bp)
AAGAAAGTTAATTAGGTCCCTGCAG
NONE
Os.5303.1.S2_at--940--1031Chr06:28362812..28362836 (25 bp)
AGGTCCCTGCAGTTTGGAACGCGAG
NONE
Os.5303.1.S2_at--1133--4591Chr06:28362792..28362816 (25 bp)
GCGAGAAAATTTCACGTTCCTACAA
NONE
Os.5303.1.S2_at--593--8791Chr06:28362751..28362775 (25 bp)
TGTTCGAAACGAGACCGGCCAGTGT
NONE
Os.5303.1.S2_at--163--3931Chr06:28362736..28362760 (25 bp)
CGGCCAGTGTGATGGATCTGACCAA
NONE
Os.5303.1.S2_at--548--4831Chr06:28362707..28362731 (25 bp)
GCTAAGCTAACCAAAGTGTGCAGTA
NONE
Os.5303.1.S2_at--1043--5491Chr06:28362682..28362706 (25 bp)
GAACACTGTACACTGCATTTCTGCA
NONE
Os.5303.1.S2_at--649--2971Chr06:28362633..28362657 (25 bp)
AATGAGTTATTCCTAATTTCTCGCC
NONE
Target Sequence 
GCTGGACTGGGCACGGTTCTCCGTCGCCGTCCCCGCGGAACGCGTCGGCGAGATCAAGGACATCCTCGGCGGCGTCTCGG
ACCGCCGCTAGGGCGTGCTCCGCCGCCGCGTGCTGCGCGTCCGGCGCCACTTCCGGCTGAACCGGCCGCCGGCCAAGCGG
TTCGACGTGGTCAACATGGTCATCCACTCCATCTGGCTCCGCCGCCTCAACCTCAGCCTCCCCTACTGAATTACAGAATG
AACAACAAAAAAGAAAGTTAATTAGGTCCCTGCAGTTTGGAACGCGAGAAAATTTCACGTTCCTACAAAATTTGAACTGT
TCTATGTTCGAAACGAGACCGGCCAGTGTGATGGATCTGACCAAGCTAGCTAAGCTAACCAAAGTGTGCAGTAGAACACT
GTACACTGCATTTCTGCATTTATAGACAATAGGTTGTGTTCGAATGAGTTATTCCTAATTTCTCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5303.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis